flail.cc File Reference

#include <devel/init.hh>
#include <numeric/xyzTransform.io.hh>
#include <numeric/xyz.functions.hh>
#include <numeric/random/random.hh>
#include <protocols/sic_dock/Rose.hh>
#include <core/pose/Pose.hh>
#include <core/conformation/Residue.hh>
#include <core/scoring/Ramachandran.hh>
#include <sstream>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <ObjexxFCL/format.hh>
#include <ObjexxFCL/string.functions.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/annotated_sequence.hh>
#include <platform/types.hh>
#include <utility/io/ozstream.hh>

Classes
struct	Link
struct	Bola

Typedefs
typedef xyzVector< core::Real >	V
typedef xyzMatrix< core::Real >	M
typedef xyzTransform< core::Real >	X
typedef core::id::AtomID	AID

Functions
static float	fastpow2 (float p)
static float	fastexp (float p)
void	register_options ()
int	main (int argv, char **argc)

Variables
core::Real const	eps = 0.000001

Typedef Documentation

AID

typedef core::id::AtomID AID

M

typedef xyzMatrix<core::Real> M

V

typedef xyzVector<core::Real> V

X

typedef xyzTransform<core::Real> X

Function Documentation

fastexp()

static float fastexp ( float  p )

inlinestatic

References fastpow2(), and kmeans_adaptive_kernel_density_bb_dependent_rotlib::p.

Referenced by main(), and Bola::random_close_phipsi_from_rama().

fastpow2()

static float fastpow2 ( float  p )

inlinestatic

References create_a3b_hbs::f, create_a3b_hbs::i, enumerate_junctions::int, offset, kmeans_adaptive_kernel_density_bb_dependent_rotlib::p, kmeans_adaptive_kernel_density_bb_dependent_rotlib::v, w, and predPRE::z.

Referenced by fastexp().

main()

int main	(	int	argv,
		char **	argc
	)

References argv, utility::io::oc::cout, Bola::dump_pdb(), test.T009_Exceptions::e, end, ObjexxFCL::format::F(), fastexp(), Bola::get_target_distance(), 3d_histogram::hist, create_a3b_hbs::i, test.T110_numeric::I, basic::init(), enumerate_junctions::int, test.Workshop4test::last_score, Bola::move_sd_, Bola::naccepts, Bola::nclashes, out::nstruct(), Bola::ntrials, out::file::o(), option, erraser_single_res_analysis::out, basic::options::OptionKeys::mp::assembly::poses, basic::options::OptionKeys::remodel::rama, Bola::random_nonclashing_move(), register_options(), in::file::s(), create_a3b_hbs::score, ObjexxFCL::string_of(), numeric::sum(), tag, basic::options::OptionKeys::in::target_residues, local::temperature, Bola::undo_most_recent_move(), numeric::random::uniform(), basic::options::OptionKeys::inout::dbms::user, and utility_exit_with_message.

register_options()

void register_options

(

)

References NEW_OPT, basic::options::OptionKeys::in::target_residues, and local::temperature.

Referenced by main().

Variable Documentation

eps

core::Real const eps = 0.000001

Referenced by numeric::linear_algebra::epslon(), numeric::nls::lm_lmdif(), main(), multiclass_probability(), sigmoid_train(), and test().