Link Struct Reference

Public Types
typedef utility::vector1< V >	PTS

Public Member Functions
	Link (std::string const &seq)
void	undo_most_recent_move ()
void	set_phi_psi (core::Size i, core::Real phi, core::Real psi)
void	dump_pdb (std::ostream &out, char chain='L') const
void	dump_pdb (std::string const &fn, char chain='L') const
X const	n_anchor ()
X const	c_anchor ()
void	align_n (X const &anchor)
void	align_c (X const &anchor)
bool	clashes () const
bool	clashes (Link const &o) const
bool	clashes (Rose const &rose) const
core::Size	nres () const
bool	is_connected () const
Real	get_phi (core::Size i)
Real	get_psi (core::Size i)
void	move_phi (core::Size i, core::Real deg)
void	move_psi (core::Size i, core::Real deg)

Public Attributes
vector1< core::chemical::AA >	aas

Private Member Functions
void	rotate (core::Size const &ibond, core::Real const &deg)
void	set_phi (core::Size i, core::Real deg)
void	set_psi (core::Size i, core::Real deg)

Private Attributes
core::Size	N
PTS	P
core::Size	last_move_res
core::Real	last_move_phi
core::Real	last_move_psi

Member Typedef Documentation

PTS

typedef utility::vector1<V> Link::PTS

Constructor & Destructor Documentation

Link()

Link::Link ( std::string const &  seq )

inline

References N, kmeans_adaptive_kernel_density_bb_dependent_rotlib::p, P, and beta_sc_scan::seq.

Member Function Documentation

align_c()

void Link::align_c ( X const &  anchor )

inline

References basic::options::OptionKeys::AnchoredDesign::anchor, create_a3b_hbs::i, P, and x.

align_n()

void Link::align_n ( X const &  anchor )

inline

References basic::options::OptionKeys::AnchoredDesign::anchor, create_a3b_hbs::i, P, and x.

c_anchor()

X const Link::c_anchor ( )

inline

References N, and P.

clashes() [1/3]

bool Link::clashes ( ) const

inline

References create_a3b_hbs::i, create_a3b_hbs::j, and P.

clashes() [2/3]

bool Link::clashes ( Link const &  o ) const

inline

References create_a3b_hbs::i, create_a3b_hbs::j, basic::options::OptionKeys::out::file::o, and P.

clashes() [3/3]

bool Link::clashes ( Rose const &  rose ) const

inline

References create_a3b_hbs::i, N, and P.

dump_pdb() [1/2]

void Link::dump_pdb ( std::ostream &  out, char  chain = 'L'  ) const

inline

References predPRE::chain, ObjexxFCL::format::F(), create_a3b_hbs::i, test.T110_numeric::I, N, P, and kmeans_adaptive_kernel_density_bb_dependent_rotlib::v.

dump_pdb() [2/2]

void Link::dump_pdb ( std::string const &  fn, char  chain = 'L'  ) const

inline

References predPRE::chain, basic::options::OptionKeys::matdes::dock::dump_pdb, kmeans_adaptive_kernel_density_bb_dependent_rotlib::fn, and erraser_single_res_analysis::out.

get_phi()

Real Link::get_phi ( core::Size  i )

inline

References numeric::dihedral_degrees(), create_a3b_hbs::i, and P.

get_psi()

Real Link::get_psi ( core::Size  i )

inline

References numeric::dihedral_degrees(), create_a3b_hbs::i, and P.

is_connected()

bool Link::is_connected ( ) const

inline

References create_a3b_hbs::i, and P.

move_phi()

void Link::move_phi ( core::Size  i, core::Real  deg  )

inline

References create_a3b_hbs::i, and pyrosetta.bindings.pose::rotate().

move_psi()

void Link::move_psi ( core::Size  i, core::Real  deg  )

inline

References create_a3b_hbs::i, and pyrosetta.bindings.pose::rotate().

n_anchor()

X const Link::n_anchor ( )

inline

References P.

nres()

core::Size Link::nres ( ) const

inline

References N.

rotate()

void Link::rotate ( core::Size const &  ibond, core::Real const &  deg  )

inlineprivate

References create_a3b_hbs::i, N, P, rot, and utility_exit_with_message.

set_phi()

void Link::set_phi ( core::Size  i, core::Real  deg  )

inlineprivate

References numeric::dihedral_degrees(), create_a3b_hbs::i, P, and pyrosetta.bindings.pose::rotate().

set_phi_psi()

void Link::set_phi_psi ( core::Size  i, core::Real  phi, core::Real  psi  )

inline

References create_a3b_hbs::i, oop_conformations::phi, and oop_conformations::psi.

set_psi()

void Link::set_psi ( core::Size  i, core::Real  deg  )

inlineprivate

References numeric::dihedral_degrees(), create_a3b_hbs::i, P, and pyrosetta.bindings.pose::rotate().

undo_most_recent_move()

void Link::undo_most_recent_move ( )

inline

Member Data Documentation

aas

vector1<core::chemical::AA> Link::aas

last_move_phi

core::Real Link::last_move_phi

private

last_move_psi

core::Real Link::last_move_psi

private

last_move_res

core::Size Link::last_move_res

private

N

core::Size Link::N

private

Referenced by test.Workshop9_my_shapes.PhiNByXDegreesMover::__str__(), and test.Workshop9_my_shapes.PhiNByXDegreesMover::apply().

P

PTS Link::P

private

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The documentation for this struct was generated from the following file:

• src/apps/pilot/will/old/flail.cc