oop_scan Namespace Reference

Functions
def	margin (val, comp, range)

Variables
	score_fxn = scoring.get_score_function()
	filename = sys.argv[1]
	pose = Pose()
bool	anything_okay_for_orientation = False
int	mrgn = 30
	ii
	v1 = pose.residue(ii ).atom("H").xyz() - pose.residue(ii ).atom("N").xyz()
	v2 = pose.residue(ii + 1).atom("H").xyz() - pose.residue(ii + 1).atom("N").xyz()

Function Documentation

margin()

def oop_scan.margin	(		val,
			comp,
			range
	)

Variable Documentation

anything_okay_for_orientation

bool oop_scan.anything_okay_for_orientation = False

filename

oop_scan.filename = sys.argv[1]

ii

oop_scan.ii

mrgn

int oop_scan.mrgn = 30

pose

oop_scan.pose = Pose()

score_fxn

oop_scan.score_fxn = scoring.get_score_function()

v1

oop_scan.v1 = pose.residue(ii ).atom("H").xyz() - pose.residue(ii ).atom("N").xyz()

Referenced by numeric::deriv.angle_p2_deriv(), assign_rigid_body_settings_to_clusters_test(), brute_force_matcher(), cluster_rigid_body_settings_test(), compute_deficit(), numeric::statistics.corrcoef_with_provided_mean_and_std_dev(), numeric::statistics.cov_with_provided_mean(), numeric::deriv.dihedral_p1_cosine_deriv_first(), numeric::deriv.dihedral_p2_cosine_deriv_first(), do_the_match(), dotpdt(), fix_sugar_bond_angles_CLOSE_BOND(), numeric::random::RandomGenerator.gaussian(), get_angles(), grid_matcher(), main(), operator+(), numeric::deriv.p1_theta_deriv(), perturb_bb_and_relax(), numeric::linear_algebra.qzhes(), numeric::linear_algebra.qzit(), numeric::linear_algebra.qzval(), refold_second(), replace_torsion_angles(), report_and_dump(), wriggle_test(), and numeric::deriv.x_and_dtheta_dx().

v2

oop_scan.v2 = pose.residue(ii + 1).atom("H").xyz() - pose.residue(ii + 1).atom("N").xyz()

Referenced by numeric::deriv.angle_p2_deriv(), assign_rigid_body_settings_to_clusters_test(), calc_dist(), cluster_rigid_body_settings_test(), compute_deficit(), numeric::statistics.corrcoef_with_provided_mean_and_std_dev(), numeric::statistics.cov_with_provided_mean(), numeric::deriv.dihedral_p1_cosine_deriv_first(), numeric::deriv.dihedral_p2_cosine_deriv_first(), do_the_match(), dotpdt(), fix_sugar_bond_angles_CLOSE_BOND(), numeric::random::RandomGenerator.gaussian(), get_angles(), main(), operator+(), numeric::deriv.p1_theta_deriv(), perturb_bb_and_relax(), numeric::linear_algebra.qzhes(), numeric::linear_algebra.qzit(), numeric::linear_algebra.qzval(), refold_second(), replace_torsion_angles(), report_and_dump(), wriggle_test(), and numeric::deriv.x_and_dtheta_dx().