macrocycle_sampling.cc File Reference

#include <devel/init.hh>
#include <core/types.hh>
#include <core/io/carbohydrates/pose_io.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/import_pose/import_pose.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <protocols/simple_moves/BackboneMover.hh>
#include <protocols/minimization_packing/MinMover.hh>
#include <protocols/simple_moves/RandomTorsionMover.hh>
#include <protocols/moves/TrialMover.hh>
#include <protocols/moves/RepeatMover.hh>
#include <protocols/moves/MoverContainer.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/rigid/RigidBodyMover.hh>
#include <protocols/docking/DockingInitialPerturbation.hh>
#include <protocols/docking/util.hh>
#include <protocols/relax/AtomCoordinateCstMover.hh>
#include <protocols/loop_modeling/types.hh>
#include <protocols/loop_modeling/LoopBuilder.hh>
#include <protocols/loop_modeling/LoopProtocol.hh>
#include <protocols/loop_modeling/samplers/LegacyKicSampler.hh>
#include <protocols/loop_modeling/refiners/MinimizationRefiner.hh>
#include <protocols/loop_modeling/refiners/RotamerTrialsRefiner.hh>
#include <protocols/loop_modeling/refiners/RepackingRefiner.hh>
#include <protocols/kinematic_closure/KicMover.hh>
#include <protocols/kinematic_closure/perturbers/RamaPerturber.hh>
#include <protocols/kinematic_closure/perturbers/FragmentPerturber.hh>
#include <protocols/loops/Loop.hh>
#include <protocols/loops/Loops.hh>
#include <protocols/loops/loops_main.hh>
#include <protocols/loops/util.hh>
#include <utility/vector1.hh>
#include <utility/string_util.hh>
#include <numeric/random/random.hh>
#include <numeric/xyzVector.hh>
#include <iostream>
#include <basic/options/keys/loops.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <protocols/ncbb/oop/OopCreatorMover.hh>
#include <protocols/ncbb/oop/OopRandomSmallMover.hh>

Functions
utility::vector1< Real >	load_bb_torsions_into_vector (core::pose::Pose &pose)
Real	compute_deficit (utility::vector1< Real > v1, utility::vector1< Real > v2)
int	main (int argc, char *argv[])

Function Documentation

compute_deficit()

Real compute_deficit	(	utility::vector1< Real >	v1,
		utility::vector1< Real >	v2
	)

References create_a3b_hbs::ii, runtime_assert, oop_scan::v1, and oop_scan::v2.

load_bb_torsions_into_vector()

utility::vector1< Real > load_bb_torsions_into_vector

(

core::pose::Pose &

pose

)

References create_a3b_hbs::ii, beta_nonlocal::jj, beta_nonlocal::pose, and subloop_histogram::size.

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, basic::options::OptionKeys::loops::coord_cst, utility::io::oc::cout, loops::cutpoint, test.T009_Exceptions::e, basic::options::OptionKeys::loops::fast, lactamize::filename, basic::init(), loops_kic::kic_mover, basic::options::OptionKeys::cluster::loops, max(), basic::options::OptionKeys::loops::ccd::max_cycles, basic::options::OptionKeys::loops::max_inner_cycles, docking::native_pose, basic::options::option, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, basic::options::OptionKeys::docking::ligand::protocol, basic::options::OptionKeys::loops::ramp_fa_rep, basic::options::OptionKeys::loops::ramp_rama, basic::options::OptionKeys::loops::refine_outer_cycles, basic::options::OptionKeys::docking::repack_period, basic::options::OptionKeys::loops::repack_period, basic::options::OptionKeys::in::file::s, beta_nonlocal::score_fxn, basic::options::OptionKeys::run::test_cycles, and basic::options::OptionKeys::inout::dbms::user.