get_rmsd.cc File Reference

#include <core/types.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/io/silent/BinarySilentStruct.hh>
#include <core/io/silent/SilentFileOptions.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/rms_util.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <protocols/viewer/viewers.hh>
#include <core/pose/Pose.hh>
#include <core/pose/full_model_info/FullModelInfo.fwd.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <core/init/init.hh>
#include <core/import_pose/import_pose.hh>
#include <core/import_pose/pose_stream/PoseInputStream.hh>
#include <core/import_pose/pose_stream/PoseInputStream.fwd.hh>
#include <core/import_pose/pose_stream/PDBPoseInputStream.hh>
#include <core/import_pose/pose_stream/SilentFilePoseInputStream.hh>
#include <utility/vector1.hh>
#include <iostream>
#include <string>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <utility/excn/Exceptions.hh>
#include <core/pose/init_id_map.hh>

Functions
void	get_rmsd ()
void *	my_main (void *)
int	main (int argc, char *argv[])

Function Documentation

get_rmsd()

void get_rmsd

(

)

References basic::options::OptionKeys::chemical::chemical, utility::io::oc::cout, pyrosetta::create_score_function, create_a3b_hbs::i, gaussian-sampling::input, create_a3b_hbs::j, in::file::native(), docking::native_pose, basic::options::option, option, basic::options::OptionKeys::full_model::other_poses, beta_nonlocal::pose, utility::replace_in(), average_rmsds::rmsd, basic::options::OptionKeys::stepwise::rna::rmsd_res, basic::options::OptionKeys::abinitio::rmsd_residues, test.T200_Scoring::rsd1, test.T200_Scoring::rsd2, docking::s, in::file::s(), oop_conformations::scorefxn, basic::options::OptionKeys::frags::scoring::scoring, basic::options::OptionKeys::in::file::silent, in::file::silent(), out::file::silent(), superimpose_pose(), tag, tag_from_pose(), in::file::tags(), basic::options::OptionKeys::inout::dbms::user, and basic::options::OptionKeys::score::weights.

Referenced by my_main().

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, utility::io::oc::cout, test.T009_Exceptions::e, basic::init(), my_main(), in::file::native(), NEW_OPT, option, basic::options::OptionKeys::stepwise::rna::rmsd_res, in::file::s(), in::file::silent(), in::file::tags(), viewer_main(), and score::weights().

my_main()

void* my_main

(

void *

)

References utility::options::OptionKeys::options::exit, and get_rmsd().

Referenced by main().