benchmark_k_medoids.cc File Reference

#include <devel/init.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/jd3.OptionKeys.gen.hh>
#include <utility/pointer/memory.hh>
#include <utility/excn/Exceptions.hh>
#include <protocols/multistage_rosetta_scripts/cluster/KMedoids.hh>
#include <protocols/multistage_rosetta_scripts/cluster/KMedoidsOnTheFly.hh>
#include <protocols/multistage_rosetta_scripts/cluster/metrics/SequenceMetric.hh>
#include <numeric/random/random.hh>
#include <string>
#include <chrono>
#include <core/types.hh>

Functions
void	test ()
SequenceMetricOP	generate_sequence_binary_alphabet (core::Size length)
int	main2 (int argc, char *argv[])
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.pilot.jackmaguire.BenchmarkKMedoids")

Detailed Description

Author

Jack Maguire

Function Documentation

generate_sequence_binary_alphabet()

SequenceMetricOP generate_sequence_binary_alphabet

(

core::Size

length

)

References create_a3b_hbs::ii, oop_conformations::length, numeric::random::random_range(), numeric::random::rg(), and basic::options::OptionKeys::relax::sequence.

Referenced by main().

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, jd3::do_not_archive_on_node0(), test.T009_Exceptions::e, end, generate_sequence_binary_alphabet(), basic::init(), jd3::n_archive_nodes(), basic::options::OptionKeys::dna::specificity::nloop, basic::options::OptionKeys::cmiles::kcluster::num_clusters, option, subloop_histogram::size, basic::options::OptionKeys::cutoutdomain::start, TR, and basic::options::OptionKeys::inout::dbms::user.

main2()

int main2	(	int	argc,
		char *	argv[]
	)

References argv, basic::init(), and test().

test()

void test

(

)

References compute_difference::b, create_a3b_hbs::i, create_a3b_hbs::j, and TR.

Referenced by main2().

Variable Documentation

TR

basic::Tracer TR("apps.pilot.jackmaguire.BenchmarkKMedoids") ( "apps.pilot.jackmaguire.BenchmarkKMedoids"  )

static

Referenced by main(), and test().