domains.cc File Reference

#include <core/pose/Pose.hh>
#include <core/import_pose/import_pose.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <devel/init.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <core/pose/PDBInfo.hh>
#include <utility/VirtualBase.hh>
#include <utility/pointer/owning_ptr.hh>
#include <protocols/fldsgn/topology/SS_Info2.hh>
#include <protocols/fldsgn/topology/StrandPairing.hh>
#include <protocols/fldsgn/topology/util.hh>
#include <protocols/fldsgn/topology/Sheet.hh>
#include <string>
#include <algorithm>
#include <boost/xpressive/xpressive.hpp>
#include <boost/tuple/tuple.hpp>
#include <boost/lexical_cast.hpp>
#include <set>
#include <sstream>
#include <utility/excn/Exceptions.hh>

Classes
class	Domain
class	DomainDescription
class	DomainFinder
class	ThisApplication

Typedefs
typedef utility::pointer::owning_ptr< Domain >	DomainOP
typedef boost::tuple< Size, Size >	DomainMatch
typedef utility::pointer::owning_ptr< DomainDescription >	DomainDescriptionOP

Functions
template<typename T >
std::string	vec2str (const T &vec)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("domain_test")

Typedef Documentation

DomainDescriptionOP

typedef utility::pointer::owning_ptr< DomainDescription > DomainDescriptionOP

DomainMatch

typedef boost::tuple<Size, Size> DomainMatch

DomainOP

typedef utility::pointer::owning_ptr< Domain > DomainOP

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, basic::options::OptionKeys::in::file::dssp, test.T009_Exceptions::e, basic::init(), option, kmeans_adaptive_kernel_density_bb_dependent_rotlib::p, kic_runner::pdb, pyrosetta.distributed.io::pose_from_file, ThisApplication::register_options(), DomainDescription::sheet_match(), DomainDescription::ss_match(), and TR.

vec2str()

template<typename T >

std::string vec2str

(

const T &

vec

)

References erraser_single_res_analysis::out, and vec().

Variable Documentation

TR

basic::Tracer TR("domain_test") ( "domain_test"  )

static

Referenced by main(), DomainDescription::sheet_match(), and DomainDescription::ss_match().