DomainDescription Class Reference

Inheritance diagram for DomainDescription:

Public Member Functions
	DomainDescription (const std::string &name, const std::string &sheet_descriptions, const std::string &regex_pattern, bool barrel=false)
bool	ss_match (const Pose &p, vector1< DomainMatch > &ss_matches)
vector1< DomainOP >	sheet_match (const PoseOP &p, vector1< DomainMatch > &ss_matches)
Public Member Functions inherited from utility::VirtualBase
	VirtualBase ()=default
	Default constructor. More...
virtual	~VirtualBase ()=default
	The virtual destructor is one of the main reasons for the VirtualBase class. More...
	VirtualBase (VirtualBase const &)=default
	VirtualBase (VirtualBase &&)=default
VirtualBase &	operator= (VirtualBase const &)=default
VirtualBase &	operator= (VirtualBase &&)=default

Private Types
typedef boost::tuple< vector1< Size >, vector1< char >, vector1< bool > >	SheetDescription

Private Member Functions
Size	compatible_sheet (const topology::SheetOP &sheet, std::set< Size > exclude_sheets)
	return the index of a compatible SheetDescription for a sheet, 0 if non of the sheets are compatible. More...
vector1< bool >	less_than_sequencial_comparison (const vector1< Size > &elements)

Private Attributes
std::string	name_
std::string	regex_pattern_
boostx::sregex	regex_expression_
vector1< SheetDescription >	sheet_descriptions_
topology::SS_Info2_OP	ss_info_
bool	barrel_
Size	nstrands_
Size	nhelices_
Size	nloops_

Member Typedef Documentation

SheetDescription

typedef boost::tuple< vector1<Size>, vector1<char>, vector1<bool> > DomainDescription::SheetDescription

private

Constructor & Destructor Documentation

DomainDescription()

DomainDescription::DomainDescription ( const std::string &  name, const std::string &  sheet_descriptions, const std::string &  regex_pattern, bool  barrel = false  )

inline

References compile(), end, basic::options::OptionKeys::stepwise::s1, and basic::options::OptionKeys::stepwise::s2.

Member Function Documentation

compatible_sheet()

Size DomainDescription::compatible_sheet ( const topology::SheetOP &  sheet, std::set< Size >  exclude_sheets  )

inlineprivate

return the index of a compatible SheetDescription for a sheet, 0 if non of the sheets are compatible.

References options_will::desc, create_a3b_hbs::i, and reverse().

less_than_sequencial_comparison()

vector1<bool> DomainDescription::less_than_sequencial_comparison ( const vector1< Size > &  elements )

inlineprivate

sheet_match()

vector1<DomainOP> DomainDescription::sheet_match ( const PoseOP &  p, vector1< DomainMatch > &  ss_matches  )

inline

References create_a3b_hbs::i, subloop_histogram::iterator, oop_conformations::length, kmeans_adaptive_kernel_density_bb_dependent_rotlib::p, basic::options::OptionKeys::jumps::sheets, basic::options::OptionKeys::cutoutdomain::start, and TR.

Referenced by main().

ss_match()

bool DomainDescription::ss_match ( const Pose &  p, vector1< DomainMatch > &  ss_matches  )

inline

References end, kmeans_adaptive_kernel_density_bb_dependent_rotlib::m, kmeans_adaptive_kernel_density_bb_dependent_rotlib::p, secstruct(), and TR.

Referenced by main().

Member Data Documentation

barrel_

bool DomainDescription::barrel_

private

name_

std::string DomainDescription::name_

private

nhelices_

Size DomainDescription::nhelices_

private

nloops_

Size DomainDescription::nloops_

private

nstrands_

Size DomainDescription::nstrands_

private

regex_expression_

boostx::sregex DomainDescription::regex_expression_

private

regex_pattern_

std::string DomainDescription::regex_pattern_

private

sheet_descriptions_

vector1<SheetDescription> DomainDescription::sheet_descriptions_

private

ss_info_

topology::SS_Info2_OP DomainDescription::ss_info_

private

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The documentation for this class was generated from the following file:

• src/apps/pilot/javierbq/domains.cc