BundleDumper.cc File Reference

#include <protocols/sewing/BundlePairRmsdWorkUnit.hh>
#include <basic/gpu/GPU.hh>
#include <basic/gpu/Timer.hh>
#include <core/pose/util.hh>
#include <protocols/wum/WorkUnitList.hh>
#include <protocols/wum/WorkUnitManager.hh>
#include <protocols/wum/MPI_WorkUnitManager_Slave.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/wum.OptionKeys.gen.hh>
#include <basic/options/keys/inout.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <basic/database/schema_generator/PrimaryKey.hh>
#include <basic/database/schema_generator/ForeignKey.hh>
#include <basic/database/schema_generator/Column.hh>
#include <basic/database/schema_generator/Schema.hh>
#include <basic/database/sql_utils.hh>
#include <basic/Tracer.hh>
#include <cstdio>
#include <devel/init.hh>
#include <numeric/xyzVector.hh>
#include <numeric/model_quality/rms.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <core/import_pose/import_pose.hh>
#include <core/util/SwitchResidueTypeSet.hh>
#include <utility/sql_database/DatabaseSessionManager.hh>
#include <utility/string_util.hh>
#include <utility/io/izstream.hh>
#include <protocols/features/ProteinSilentReport.hh>

Namespaces
	BundleDumper

Typedefs
typedef utility::vector1< std::pair< protocols::features::StructureID, core::Size > >	BundleKeys

Functions
BundleKeys	get_pair_keys_from_list (std::string const &filename)
BundleKeys	get_random_bundle_ids (utility::sql_database::sessionOP db_session, core::Size n)
void	dump_bundle_pose (utility::sql_database::sessionOP db_session, protocols::features::StructureID struct_id, core::Size bundle_id)
void	dump_pair_pose (utility::sql_database::sessionOP db_session, protocols::features::StructureID struct_id, core::Size pair_id)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("BundleDumper")
basic::options::FileOptionKey const	BundleDumper::pair_list ("pair_list")
basic::options::IntegerOptionKey const	BundleDumper::num_bundles ("num_bundles")

Typedef Documentation

BundleKeys

typedef utility::vector1< std::pair<protocols::features::StructureID, core::Size> > BundleKeys

Function Documentation

dump_bundle_pose()

void dump_bundle_pose	(	utility::sql_database::sessionOP	db_session,
		protocols::features::StructureID	struct_id,
		core::Size	bundle_id
	)

References create_a3b_hbs::i, max(), min(), beta_nonlocal::pose, res, basic::database::safely_prepare_statement(), and basic::database::safely_read_from_database().

Referenced by main().

dump_pair_pose()

void dump_pair_pose	(	utility::sql_database::sessionOP	db_session,
		protocols::features::StructureID	struct_id,
		core::Size	pair_id
	)

References create_a3b_hbs::i, max(), min(), beta_nonlocal::pose, res, basic::database::safely_prepare_statement(), and basic::database::safely_read_from_database().

Referenced by main().

get_pair_keys_from_list()

BundleKeys get_pair_keys_from_list

(

std::string const &

filename

)

References lactamize::filename, getline(), line, runtime_assert, utility::split(), and utility::string2int().

Referenced by main().

get_random_bundle_ids()

BundleKeys get_random_bundle_ids	(	utility::sql_database::sessionOP	db_session,
		core::Size	n
	)

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, basic::database::safely_prepare_statement(), and basic::database::safely_read_from_database().

Referenced by main().

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, dump_bundle_pose(), dump_pair_pose(), create_a3b_hbs::first, basic::database::get_db_session(), get_pair_keys_from_list(), get_random_bundle_ids(), create_a3b_hbs::i, basic::init(), BundleDumper::num_bundles, option, BundleDumper::pair_list, basic::options::OptionKeys::inout::dbms::user, and basic::options::OptionKeys::wum::wum.

Variable Documentation

TR

basic::Tracer TR("BundleDumper") ( "BundleDumper"  )

static

Author

Tim Jacobs