cluster_cyc_disulf.cc File Reference

#include <protocols/simple_moves/ScoreMover.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/pose/util.hh>
#include <core/scoring/symmetry/SymmetricScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/import_pose/import_pose.hh>
#include <protocols/cluster/cluster.hh>
#include <protocols/loops/Loops.hh>
#include <core/import_pose/pose_stream/MetaPoseInputStream.hh>
#include <core/import_pose/pose_stream/util.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <devel/init.hh>
#include <iostream>
#include <string>
#include <deque>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/cluster.OptionKeys.gen.hh>
#include <basic/options/keys/symmetry.OptionKeys.gen.hh>
#include <utility/vector1.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/rms_util.tmpl.hh>
#include <ObjexxFCL/format.hh>

Classes
class	ClusterCycDisulf

Typedefs
typedef utility::pointer::owning_ptr< ClusterCycDisulf >	ClusterCycDisulfOP

Functions
void	register_options ()
bool	use_in_rmsd (core::pose::Pose const &pose1, core::pose::Pose const &pose2, core::Size resno, core::Size atomno)
int	main (int argc, char *argv[])

Typedef Documentation

ClusterCycDisulfOP

typedef utility::pointer::owning_ptr<ClusterCycDisulf> ClusterCycDisulfOP

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, basic::options::OptionKeys::cluster::cluster, count, utility::io::oc::cout, test.T009_Exceptions::e, basic::options::OptionKeys::cluster::export_only_low, ObjexxFCL::format::F(), in::file::fullatom(), create_a3b_hbs::i, basic::init(), gaussian-sampling::input, enumerate_junctions::int, create_a3b_hbs::j, basic::options::OptionKeys::cluster::limit_cluster_size, basic::options::OptionKeys::cluster::limit_clusters, basic::options::OptionKeys::cluster::limit_total_structures, basic::options::OptionKeys::cluster::max_total_cluster, out::nooutput(), option, out::output(), basic::options::OptionKeys::cluster::population_weight, beta_nonlocal::pose, out::prefix(), create_a3b_hbs::r, basic::options::OptionKeys::cluster::radius, register_options(), basic::options::OptionKeys::cluster::remove_highest_energy_member, basic::options::OptionKeys::cluster::remove_singletons, basic::options::OptionKeys::in::file::residue_type_set, in::file::s(), basic::options::OptionKeys::frags::scoring::scoring, test.T120_core::sfxn, subloop_histogram::size, basic::options::OptionKeys::cluster::sort_groups_by_energy, superimpose_pose(), basic::options::OptionKeys::symmetry::symmetric_rmsd, use_in_rmsd(), and basic::options::OptionKeys::inout::dbms::user.

register_options()

void register_options

(

)

References NEW_OPT.

Referenced by main().

use_in_rmsd()

bool use_in_rmsd	(	core::pose::Pose const &	pose1,
		core::pose::Pose const &	pose2,
		core::Size	resno,
		core::Size	atomno
	)

References test.T008_Serialization::pose1, and test.T008_Serialization::pose2.

Referenced by ClusterCycDisulf::align_clusters(), ClusterCycDisulf::get_distance_measure(), and main().