helpers Namespace Reference

Functions
def	find_rosetta_root ()
def	rosetta_command (command)
def	analysis_script (command)
def	db_to_rosetta (database)
def	database_arguments (url)
def	connect_to_database (url)
def	cache_trajectory (job, force=False)
def	cache_array (job, type, array, force=False)
def	load_array (job, type)
def	load_arrays (job, type)
def	delete_job (job)
def	wipe_cache (job)
def	define_args (*specializations)
def	job_title (arguments)
def	pick_torsions (arguments, torsions)
def	make_plot (arguments)
def	finish_script ()

Variables
	plural = lambda x: (x, '' if x == 1 else 's')
	URL
	SESSION

Function Documentation

analysis_script()

def helpers.analysis_script

(

command

)

References find_rosetta_root().

cache_array()

def helpers.cache_array	(		job,
			type,
			array,
			force = False
	)

References enumerate_junctions.bool, pyrosetta.tests.distributed.test_dask.format, and sum().

Referenced by cache_trajectory().

cache_trajectory()

def helpers.cache_trajectory	(		job,
			force = False
	)

References cache_array(), database_arguments(), basic::options::OptionKeys::stepwise.enumerate, run_backbone.float, enumerate_junctions.int, and rosetta_command().

connect_to_database()

def helpers.connect_to_database

(

url

)

Referenced by autocorrelation.find_autocorrelation().

database_arguments()

def helpers.database_arguments

(

url

)

References str().

Referenced by cache_trajectory().

db_to_rosetta()

def helpers.db_to_rosetta

(

database

)

Referenced by job_manager.SaveMovie.run().

define_args()

def helpers.define_args

(

*

specializations

)

delete_job()

def helpers.delete_job

(

job

)

References plural.

find_rosetta_root()

def helpers.find_rosetta_root

(

)

References basic::database.open().

Referenced by analysis_script(), and rosetta_command().

finish_script()

def helpers.finish_script

(

)

Referenced by make_plot().

job_title()

def helpers.job_title

(

arguments

)

References pyrosetta.tests.distributed.test_dask.format.

load_array()

def helpers.load_array	(		job,
			type
	)

References numeric::constants::f.one.

Referenced by load_arrays().

load_arrays()

def helpers.load_arrays	(		job,
			type
	)

References load_array().

make_plot()

def helpers.make_plot

(

arguments

)

References finish_script().

pick_torsions()

def helpers.pick_torsions	(		arguments,
			torsions
	)

References set().

rosetta_command()

def helpers.rosetta_command

(

command

)

References find_rosetta_root().

Referenced by cache_trajectory(), and job_manager.SaveMovie.run().

wipe_cache()

def helpers.wipe_cache

(

job

)

References plural.

Variable Documentation

plural

helpers.plural = lambda x: (x, '' if x == 1 else 's')

Referenced by schema.Job.age(), delete_job(), and wipe_cache().

SESSION

helpers.SESSION

URL

helpers.URL