SphereSample Class Reference

#include <SphereSample.hh>

Public Member Functions
	SphereSample ()
	~SphereSample ()
void	read_sphere_data ()
core::Real	covering_radius_degrees (int level)
void	pdb_from_level (int level, std::string fname)
bool	sanity_check ()
core::Size	num_sample (int level) const
SphereNode const &	sample (int l, int i) const
core::Size	sample_offset (int level) const
int	num_sample1 () const
int	num_sample2 () const
int	num_sample3 () const
int	num_sample4 () const
int	num_sample5 () const
int	num_sample6 () const
int	num_sample7 () const
SphereNode const &	sample1 (int i)
SphereNode const &	sample2 (int i)
SphereNode const &	sample3 (int i)
SphereNode const &	sample4 (int i)
SphereNode const &	sample5 (int i)
SphereNode const &	sample6 (int i)
SphereNode const &	sample7 (int i)

Private Attributes
utility::vector1< SphereNode * >	allnodes_

Constructor & Destructor Documentation

SphereSample()

SphereSample::SphereSample ( )

inline

References read_sphere_data(), and sanity_check().

~SphereSample()

SphereSample::~SphereSample ( )

inline

References allnodes_, and create_a3b_hbs::i.

Member Function Documentation

covering_radius_degrees()

core::Real SphereSample::covering_radius_degrees ( int  level )

inline

References basic::options::OptionKeys::out::level, and utility_exit_with_message.

num_sample()

core::Size SphereSample::num_sample ( int  level ) const

inline

References basic::options::OptionKeys::out::level, and utility_exit_with_message.

Referenced by num_sample1(), num_sample2(), num_sample3(), num_sample4(), num_sample5(), num_sample6(), num_sample7(), pdb_from_level(), and sanity_check().

num_sample1()

int SphereSample::num_sample1 ( ) const

inline

References num_sample().

num_sample2()

int SphereSample::num_sample2 ( ) const

inline

References num_sample().

num_sample3()

int SphereSample::num_sample3 ( ) const

inline

References num_sample().

num_sample4()

int SphereSample::num_sample4 ( ) const

inline

References num_sample().

num_sample5()

int SphereSample::num_sample5 ( ) const

inline

References num_sample().

num_sample6()

int SphereSample::num_sample6 ( ) const

inline

References num_sample().

num_sample7()

int SphereSample::num_sample7 ( ) const

inline

References num_sample().

pdb_from_level()

void SphereSample::pdb_from_level ( int  level, std::string  fname  )

inline

References count, ObjexxFCL::format::F(), PREcst::fname, create_a3b_hbs::i, test.T110_numeric::I, basic::options::OptionKeys::out::level, kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, num_sample(), erraser_single_res_analysis::out, kmeans_adaptive_kernel_density_bb_dependent_rotlib::p, and sample().

read_sphere_data()

void SphereSample::read_sphere_data ( )

inline

References a, allnodes_, begin, kmeans_adaptive_kernel_density_bb_dependent_rotlib::c, create_a3b_hbs::i, basic::options::OptionKeys::in::in, extract_by_sidechain_sasa_score::l, basic::options::OptionKeys::out::level, kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, basic::options::OptionKeys::frags::contacts::neighbors, basic::database::open(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::p, and utility_exit_with_message.

Referenced by SphereSample().

sample()

SphereNode const& SphereSample::sample ( int  l, int  i  ) const

inline

References allnodes_, create_a3b_hbs::i, extract_by_sidechain_sasa_score::l, and sample_offset().

Referenced by pdb_from_level(), sample1(), sample2(), sample3(), sample4(), sample5(), sample6(), sample7(), and sanity_check().

sample1()

SphereNode const& SphereSample::sample1 ( int  i )

inline

References create_a3b_hbs::i, and sample().

sample2()

SphereNode const& SphereSample::sample2 ( int  i )

inline

References create_a3b_hbs::i, and sample().

sample3()

SphereNode const& SphereSample::sample3 ( int  i )

inline

References create_a3b_hbs::i, and sample().

sample4()

SphereNode const& SphereSample::sample4 ( int  i )

inline

References create_a3b_hbs::i, and sample().

sample5()

SphereNode const& SphereSample::sample5 ( int  i )

inline

References create_a3b_hbs::i, and sample().

sample6()

SphereNode const& SphereSample::sample6 ( int  i )

inline

References create_a3b_hbs::i, and sample().

sample7()

SphereNode const& SphereSample::sample7 ( int  i )

inline

References create_a3b_hbs::i, and sample().

sample_offset()

core::Size SphereSample::sample_offset ( int  level ) const

inline

References basic::options::OptionKeys::out::level, and utility_exit_with_message.

Referenced by sample().

sanity_check()

bool SphereSample::sanity_check ( )

inline

References allnodes_, compute_difference::b, kmeans_adaptive_kernel_density_bb_dependent_rotlib::c, create_a3b_hbs::i, basic::options::OptionKeys::in::in, extract_by_sidechain_sasa_score::l, basic::options::OptionKeys::out::level, kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, num_sample(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::p, and sample().

Referenced by SphereSample().

Member Data Documentation

allnodes_

utility::vector1<SphereNode*> SphereSample::allnodes_

private

Referenced by read_sphere_data(), sample(), sanity_check(), and ~SphereSample().

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The documentation for this class was generated from the following file:

• src/apps/pilot/will/old/SphereSample.hh