SmotifHasher Namespace Reference

Variables
basic::options::IntegerOptionKey const	num_bundles ("num_bundles")
basic::options::IntegerOptionKey const	mode ("mode")
basic::options::IntegerOptionKey const	query_id ("query_id")
basic::options::IntegerOptionKey const	min_score ("min_score")

Variable Documentation

min_score

basic::options::IntegerOptionKey const SmotifHasher::min_score("min_score")

(

"min_score"

)

Referenced by dock(), double_helix_test(), fit_helix_in_map(), gen_pep_bb_sequential(), helix_ST(), main(), MC_run(), mutate_and_score_RNP(), one_chain_MC_sampling(), one_chain_ST_MC(), place_waters_and_minimize(), register_options(), score2bin(), and score_rnp().

mode

basic::options::IntegerOptionKey const SmotifHasher::mode("mode")

(

"mode"

)

Referenced by basic::database::attributes_for_parse_database_connection(), buffered_file::buffered_file(), check_inputs_for_errors(), collect_residue_types(), distance(), numeric::nls::lm_lmdif(), main(), motif_scan(), MotifScanMover::MotifScanMover(), my_main(), basic::database::parse_database_connection(), myspace::Scheduler::pick_hashing_res(), myspace::DataClass::report_by_aa(), myspace::Scheduler::run_LH(), myspace::Scheduler::run_NM(), myspace::DataClass::scan_Evalue(), myspace::Scheduler::Scheduler(), set_basic_dock_options(), ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget::set_color_mode(), ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget::set_drag_mode(), SphereGrinder(), and numeric::interpolation::spline_from_stream().

num_bundles

basic::options::IntegerOptionKey const SmotifHasher::num_bundles("num_bundles")

(

"num_bundles"

)

query_id

basic::options::IntegerOptionKey const SmotifHasher::query_id("query_id")

(

"query_id"

)

Referenced by add_constraints(), create_starting_template(), and main().