use_asn_motifs.cc File Reference

#include <core/types.hh>
#include <core/chemical/AtomTypeSet.hh>
#include <core/chemical/MMAtomTypeSet.hh>
#include <core/id/AtomID.hh>
#include <core/chemical/AA.hh>
#include <core/conformation/Residue.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ResidueTypeSelector.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/chemical/residue_io.hh>
#include <core/chemical/VariantType.hh>
#include <devel/init.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/scoring/etable/Etable.hh>
#include <core/scoring/ScoringManager.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreType.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/Ramachandran.hh>
#include <core/pack/dunbrack/RotamerLibrary.hh>
#include <core/scoring/hbonds/HBondSet.hh>
#include <core/scoring/hbonds/hbonds.hh>
#include <core/scoring/etable/count_pair/CountPairFunction.hh>
#include <core/scoring/LREnergyContainer.hh>
#include <core/scoring/methods/LongRangeTwoBodyEnergy.hh>
#include <core/scoring/TenANeighborGraph.hh>
#include <core/pack/rotamer_trials.hh>
#include <core/pack/pack_rotamers.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/operation/TaskOperation.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/pack/rotamer_set/RotamerSet.hh>
#include <core/pack/rotamer_set/RotamerSetFactory.hh>
#include <core/pack/packer_neighbors.hh>
#include <utility/graph/Graph.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/id/AtomID_Map.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/mm/MMTorsionLibrary.hh>
#include <core/mm/MMTorsionLibrary.fwd.hh>
#include <core/optimization/types.hh>
#include <core/optimization/Multifunc.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/optimization/Minimizer.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <basic/options/util.hh>
#include <basic/basic.hh>
#include <basic/database/open.hh>
#include <utility/vector1.hh>
#include <utility/excn/Exceptions.hh>
#include <utility/pointer/owning_ptr.hh>
#include <utility/VirtualBase.hh>
#include <numeric/xyzVector.hh>
#include <numeric/random/random.hh>
#include <ObjexxFCL/string.functions.hh>
#include <protocols/dna/util.hh>
#include <protocols/loops/Loops.hh>
#include <protocols/motifs/Motif.hh>
#include <protocols/motifs/MotifLibrary.hh>
#include <protocols/motifs/IRCollection.hh>
#include <fstream>
#include <iostream>
#include <string>
#include <algorithm>
#include <core/import_pose/import_pose.hh>

Functions
void	place_waters_and_minimize (Pose &pose)
void	build_asn_motifs ()
int	main (int argc, char *argv[])

Function Documentation

build_asn_motifs()

void build_asn_motifs

(

)

References pyrosetta::create_score_function, kic_runner::pdb, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, beta_nonlocal::score_fxn, and weights().

Referenced by main().

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, build_asn_motifs(), test.T009_Exceptions::e, and basic::init().

place_waters_and_minimize()

void place_waters_and_minimize

(

Pose &

pose

)

References utility::io::oc::cout, SmotifHasher::min_score, beta_nonlocal::mm, options, beta_nonlocal::pose, oop_conformations::scorefxn, and vancomycin::task.