trial_rna_mutants.cc File Reference

Take a vector of name3s and positions. Do all combinations. More...

#include <core/types.hh>
#include <core/chemical/AA.hh>
#include <core/conformation/Residue.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeFinder.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/constraints/ConstraintSet.fwd.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/rna/RNA_ResidueLevelTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/ResfileReader.hh>
#include <protocols/rna/denovo/movers/RNA_Minimizer.hh>
#include <core/pack/pack_rotamers.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <protocols/viewer/viewers.hh>
#include <core/pose/Pose.hh>
#include <core/init/init.hh>
#include <core/pose/rna/util.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <utility/vector1.hh>
#include <utility/io/ozstream.hh>
#include <ObjexxFCL/format.hh>
#include <ObjexxFCL/string.functions.hh>
#include <protocols/rna/denovo/util.hh>
#include <fstream>
#include <iostream>
#include <string>
#include <sstream>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>
#include <platform/types.hh>
#include <core/import_pose/import_pose.hh>
#include <core/kinematics/Jump.hh>
#include <utility/vector0.hh>
#include <ObjexxFCL/DynamicIndexRange.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <utility/string_util.hh>
#include <utility/excn/Exceptions.hh>

Functions
void	rna_design_test ()
void *	my_main (void *)
int	main (int argc, char *argv[])

Detailed Description

Take a vector of name3s and positions. Do all combinations.

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, utility::io::oc::cout, test.T009_Exceptions::e, basic::init(), my_main(), NEW_OPT, and viewer_main().

my_main()

void* my_main

(

void *

)

References utility::options::OptionKeys::options::exit, and rna_design_test().

Referenced by main().

rna_design_test()

void rna_design_test

(

)

References basic::options::OptionKeys::chemical::chemical, utility::io::oc::cout, basic::options::OptionKeys::matdes::dock::dump_pdb, create_a3b_hbs::ii, min(), option, options, make_symmdef_file_denovo::pos, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, basic::options::OptionKeys::motifs::r1, basic::options::OptionKeys::motifs::r2, build_restypes::restype, hbscan::restypes, in::file::s(), oop_conformations::scorefxn, basic::options::OptionKeys::frags::scoring::scoring, challenge::ss, utility::string_split(), vancomycin::task, and value.

Referenced by my_main().