FloppyTailMover Class Reference

FloppyTail mover. More...

Inheritance diagram for FloppyTailMover:

Public Member Functions
	FloppyTailMover ()
virtual void	init_on_new_input (core::pose::Pose const &pose)
	init_on_new_input system allows for initializing these details the first time apply() is called. the job distributor will reinitialize the whole mover when the input changes (a freshly constructed mover, which will re-run this on first apply(). More...
virtual	~FloppyTailMover ()
virtual void	apply (core::pose::Pose &pose)
virtual std::string	get_name () const
virtual protocols::moves::MoverOP	fresh_instance () const
virtual bool	reinitialize_for_each_job () const
virtual bool	reinitialize_for_new_input () const

Private Attributes
core::Size	start_
core::Size	stop_
bool	init_for_input_yet_
core::scoring::ScoreFunctionOP	centroid_scorefunction_
core::scoring::ScoreFunctionOP	fullatom_scorefunction_
core::pack::task::TaskFactoryOP	task_factory_
core::kinematics::MoveMapOP	movemap_
core::kinematics::MoveMapOP	movemap_lesstail_
core::kinematics::FoldTreeOP	foldtree_
	stored so that it can be generated in the init_on_new_input function More...
core::fragment::ConstantLengthFragSetOP	fragset3mer_
protocols::loops::Loops	loops_

Detailed Description

FloppyTail mover.

Constructor & Destructor Documentation

FloppyTailMover()

FloppyTailMover::FloppyTailMover ( )

inline

References basic::options::OptionKeys::remodel::cbeta, cenpack, centroid_scorefunction_, env, basic::options::OptionKeys::in::file::frag3, fragset3mer_, fullatom_scorefunction_, basic::options::option, pair, basic::options::OptionKeys::pair_off, basic::options::OptionKeys::remodel::rama, basic::options::OptionKeys::frags::scoring::scoring, TR, basic::options::OptionKeys::inout::dbms::user, value, and basic::options::OptionKeys::remodel::vdw.

Referenced by fresh_instance().

~FloppyTailMover()

virtual FloppyTailMover::~FloppyTailMover ( )

inlinevirtual

Member Function Documentation

apply()

virtual void FloppyTailMover::apply ( core::pose::Pose &  pose )

inlinevirtual

References centroid_scorefunction_, create_extra_output(), basic::options::OptionKeys::msd::debug, end, foldtree_, fragset3mer_, fullatom_scorefunction_, create_a3b_hbs::i, init_for_input_yet_, init_on_new_input(), loops_, basic::options::OptionKeys::relax::range::min_cycles, basic::options::OptionKeys::run::min_type, basic::options::OptionKeys::MonteCarlo::MonteCarlo, movemap_, movemap_lesstail_, basic::options::option, option, test.Workshop6test::pack_mover, basic::options::OptionKeys::AnchoredDesign::perturb_cycles, basic::options::OptionKeys::AnchoredDesign::perturb_show, basic::options::OptionKeys::AnchoredDesign::perturb_temp, beta_nonlocal::pose, basic::options::OptionKeys::publication, basic::options::OptionKeys::AnchoredDesign::refine_cycles, basic::options::OptionKeys::AnchoredDesign::refine_repack_cycles, basic::options::OptionKeys::AnchoredDesign::refine_temp, basic::options::OptionKeys::repack_cycles, basic::options::OptionKeys::shear_on, basic::options::OptionKeys::short_tail_off, stop_, task_factory_, TR, and value.

Referenced by pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask::execute().

fresh_instance()

virtual protocols::moves::MoverOP FloppyTailMover::fresh_instance ( ) const

inlinevirtual

References FloppyTailMover().

get_name()

virtual std::string FloppyTailMover::get_name ( ) const

inlinevirtual

init_on_new_input()

virtual void FloppyTailMover::init_on_new_input ( core::pose::Pose const &  pose )

inlinevirtual

init_on_new_input system allows for initializing these details the first time apply() is called. the job distributor will reinitialize the whole mover when the input changes (a freshly constructed mover, which will re-run this on first apply().

References basic::options::OptionKeys::C_root, predPRE::chain, basic::options::OptionKeys::score::empty, end, basic::Tracer::Error, create_a3b_hbs::first, basic::options::OptionKeys::flexible_chain, basic::options::OptionKeys::flexible_start_resnum, basic::options::OptionKeys::flexible_stop_resnum, foldtree_, create_a3b_hbs::i, init_for_input_yet_, create_a3b_hbs::j, basic::options::OptionKeys::loops::loop_file, loops_, pyrosetta.utility.array::message, in::file::movemap(), movemap_, movemap_lesstail_, create_a3b_hbs::nres, basic::options::option, option, beta_nonlocal::pose, test.G101_Functions_Output::regions, packing::resfile(), basic::options::OptionKeys::short_tail_fraction, basic::options::OptionKeys::short_tail_off, start_, stop_, vancomycin::task, task_factory_, TR, basic::options::OptionKeys::inout::dbms::user, utility_exit_with_message, and value.

Referenced by apply().

reinitialize_for_each_job()

virtual bool FloppyTailMover::reinitialize_for_each_job ( ) const

inlinevirtual

reinitialize_for_new_input()

virtual bool FloppyTailMover::reinitialize_for_new_input ( ) const

inlinevirtual

Member Data Documentation

centroid_scorefunction_

core::scoring::ScoreFunctionOP FloppyTailMover::centroid_scorefunction_

private

Referenced by apply(), and FloppyTailMover().

foldtree_

core::kinematics::FoldTreeOP FloppyTailMover::foldtree_

private

stored so that it can be generated in the init_on_new_input function

Referenced by apply(), and init_on_new_input().

fragset3mer_

core::fragment::ConstantLengthFragSetOP FloppyTailMover::fragset3mer_

private

Referenced by apply(), and FloppyTailMover().

fullatom_scorefunction_

core::scoring::ScoreFunctionOP FloppyTailMover::fullatom_scorefunction_

private

Referenced by apply(), and FloppyTailMover().

init_for_input_yet_

bool FloppyTailMover::init_for_input_yet_

private

Referenced by apply(), and init_on_new_input().

loops_

protocols::loops::Loops FloppyTailMover::loops_

private

Referenced by apply(), and init_on_new_input().

movemap_

core::kinematics::MoveMapOP FloppyTailMover::movemap_

private

Referenced by apply(), and init_on_new_input().

movemap_lesstail_

core::kinematics::MoveMapOP FloppyTailMover::movemap_lesstail_

private

Referenced by apply(), and init_on_new_input().

start_

core::Size FloppyTailMover::start_

private

Referenced by init_on_new_input().

stop_

core::Size FloppyTailMover::stop_

private

Referenced by apply(), and init_on_new_input().

task_factory_

core::pack::task::TaskFactoryOP FloppyTailMover::task_factory_

private

Referenced by apply(), and init_on_new_input().

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The documentation for this class was generated from the following file:

• src/apps/pilot/smlewis/FloppyTail_loop.cc