test_sampling.cc File Reference

#include <apps/pilot/hpark/sampling_utils.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/relax.OptionKeys.gen.hh>
#include <protocols/normalmode/NormalModeRelaxMover.hh>
#include <protocols/normalmode/NormalModeRelaxMover.fwd.hh>
#include <protocols/relax/FastRelax.hh>
#include <protocols/md/CartesianMD.hh>
#include <protocols/simple_moves/CombinePoseMover.hh>
#include <protocols/simple_moves/BBGaussianMover.hh>
#include <protocols/loophash/LoopHashSampler.hh>
#include <protocols/loophash/LocalInserter.hh>
#include <protocols/loophash/LoopHashLibrary.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/simple_moves/sidechain_moves/SidechainMCMover.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/optimization/CartesianMinimizer.hh>
#include <core/optimization/Minimizer.fwd.hh>
#include <core/pose/Pose.hh>
#include <core/import_pose/import_pose.hh>
#include <core/conformation/Residue.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/io/silent/SilentStruct.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <protocols/simple_moves/SwitchResidueTypeSetMover.hh>
#include <numeric/random/random.hh>
#include <utility/vector1.hh>
#include <core/types.hh>
#include <devel/init.hh>
#include <sys/time.h>

Namespaces
	myspace

Functions
utility::vector1< pose::Pose >	myspace::test_NMrelaxer (pose::Pose const pose, scoring::ScoreFunctionCOP sfxn, optimization::MinimizerOptionsCOP minoptions, Size const nstruct, bool const cartesian, bool const repack)
utility::vector1< pose::Pose >	myspace::test_MD (pose::Pose const pose, scoring::ScoreFunctionCOP sfxn, scoring::ScoreFunctionCOP sfxn_obj, optimization::MinimizerOptionsCOP minoptions, Size const nstruct, Size const nper_trj)
utility::vector1< pose::Pose >	myspace::test_relax (pose::Pose const pose, scoring::ScoreFunctionCOP sfxn, Size const nstruct)
utility::vector1< pose::Pose >	myspace::test_recombine (pose::Pose const pose, pose::Pose const pose2, scoring::ScoreFunctionCOP sfxn, optimization::MinimizerOptionsCOP minoptions, Size const nstruct, bool const repack)
utility::vector1< pose::Pose >	myspace::test_bbgauss (pose::Pose const pose, scoring::ScoreFunctionCOP sfxn, optimization::MinimizerOptionsCOP minoptions, Size const nstruct, Size const report_step)
utility::vector1< pose::Pose >	myspace::test_loophash (pose::Pose const pose, scoring::ScoreFunctionCOP sfxn, optimization::MinimizerOptionsCOP minoptions, Size const nstruct, bool const local)
int	main (int argc, char *argv[])

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, basic::options::OptionKeys::loops::coord_cst, utility::io::oc::cout, pyrosetta::create_score_function, myspace::evaluate_and_write(), basic::init(), basic::options::OptionKeys::sasa::method, in::file::native(), docking::native_pose, NEW_OPT, local::nstruct, out::nstruct(), option, test.T008_Serialization::pose2, pyrosetta.distributed.io::pose_from_file, basic::options::OptionKeys::mp::assembly::poses, basic::options::OptionKeys::casp::repack, in::file::s(), test.T120_core::sfxn, myspace::test_bbgauss(), myspace::test_loophash(), myspace::test_MD(), myspace::test_NMrelaxer(), myspace::test_recombine(), myspace::test_relax(), basic::options::OptionKeys::inout::dbms::user, and score::weights().