pdbstats_rnahelix.cc File Reference

#include <core/types.hh>
#include <core/chemical/AA.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/conformation/Residue.hh>
#include <core/scoring/func/HarmonicFunc.hh>
#include <core/chemical/rna/util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <protocols/rna/denovo/util.hh>
#include <core/id/AtomID_Map.hh>
#include <core/id/AtomID.hh>
#include <core/id/DOF_ID.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/kinematics/AtomTree.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/Jump.hh>
#include <core/kinematics/Stub.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <devel/init.hh>
#include <core/import_pose/import_pose.hh>
#include <utility/vector1.hh>
#include <utility/tools/make_vector1.hh>
#include <utility/io/ozstream.hh>
#include <utility/io/izstream.hh>
#include <numeric/xyzVector.hh>
#include <numeric/xyzMatrix.hh>
#include <numeric/conversions.hh>
#include <ObjexxFCL/format.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <ObjexxFCL/string.functions.hh>
#include <fstream>
#include <iostream>
#include <string>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <core/conformation/Conformation.hh>
#include <core/scoring/constraints/Constraint.hh>
#include <numeric/xyz.functions.hh>

Typedefs
typedef numeric::xyzMatrix< Real >	Matrix

Functions
std::string	get_WC_atom (core::chemical::AA const &res_type)
void	rna_helix_pdbstats_from_pose (utility::io::ozstream &out, pose::Pose &pose, Size const count, char const chain, Size &total_residues)
void	rhiju_pdbstats ()
int	main (int argc, char *argv[])

Typedef Documentation

Matrix

typedef numeric::xyzMatrix< Real > Matrix

Function Documentation

get_WC_atom()

std::string get_WC_atom

(

core::chemical::AA const &

res_type

)

References basic::options::OptionKeys::chemical::chemical.

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, test.T009_Exceptions::e, utility::options::OptionKeys::options::exit, basic::init(), and rhiju_pdbstats().

rhiju_pdbstats()

void rhiju_pdbstats

(

)

References utility::io::oc::cerr, predPRE::chain, basic::options::OptionKeys::chemical::chemical, count, utility::io::oc::cout, utility::exit(), erraser::file_path, getline(), test.T110_numeric::I, in::file::l(), line, out::file::o(), option, erraser_single_res_analysis::out, lactamize::outfile, in::path::pdb(), bur_nodon_tyr::pdb_list, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, and rna_helix_pdbstats_from_pose().

Referenced by main().

rna_helix_pdbstats_from_pose()

void rna_helix_pdbstats_from_pose	(	utility::io::ozstream &	out,
		pose::Pose &	pose,
		Size const	count,
		char const	chain,
		Size &	total_residues
	)

References basic::options::OptionKeys::chemical::chemical, basic::options::OptionKeys::rna::denovo::denovo, create_a3b_hbs::i, basic::init(), create_a3b_hbs::nres, beta_nonlocal::pose, basic::options::OptionKeys::full_model::rna::rna, and basic::options::OptionKeys::frags::scoring::scoring.

Referenced by rhiju_pdbstats().