alignanalyse.cc File Reference

#include <protocols/moves/MonteCarlo.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <protocols/moves/rigid_body_moves.hh>
#include <protocols/loops/ccd_closure.hh>
#include <protocols/relax_protocols.hh>
#include <core/sequence/MatrixScoringScheme.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/io/pdb/build_pose_as_is.hh>
#include <core/id/AtomID.hh>
#include <utility/file/FileName.hh>
#include <utility/excn/Exceptions.hh>
#include <core/types.hh>
#include <core/scoring/sasa.hh>
#include <numeric/xyzVector.hh>
#include <basic/prof.hh>
#include <core/chemical/AtomTypeSet.hh>
#include <core/chemical/MMAtomTypeSet.hh>
#include <core/chemical/AA.hh>
#include <core/conformation/Residue.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ResidueTypeSelector.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/chemical/VariantType.hh>
#include <core/scoring/etable/Etable.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/Ramachandran.hh>
#include <core/pack/dunbrack/RotamerLibrary.hh>
#include <core/scoring/hbonds/HBondSet.hh>
#include <core/scoring/hbonds/hbonds.hh>
#include <core/scoring/etable/count_pair/CountPairFunction.hh>
#include <core/pack/rotamer_trials.hh>
#include <core/pack/pack_rotamers.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/id/AtomID_Map.hh>
#include <core/mm/MMTorsionLibrary.hh>
#include <core/mm/MMTorsionLibrary.fwd.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/pose/Pose.hh>
#include <basic/options/option.hh>
#include <basic/options/after_opts.hh>
#include <basic/basic.hh>
#include <basic/database/open.hh>
#include <devel/init.hh>
#include <utility/vector1.hh>
#include <numeric/random/random.hh>
#include <ObjexxFCL/format.hh>
#include <ObjexxFCL/string.functions.hh>
#include <core/sequence/util.hh>
#include <core/sequence/Sequence.hh>
#include <fstream>
#include <iostream>
#include <string>
#include <basic/Tracer.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <core/import_pose/import_pose.hh>

Classes
struct	StructureConfidence

Functions
float	cost (vector1< vector1< float > > &quality_vs_ir, vector1< core::Size > &model, core::Size slen)
int	main (int argc, char *argv[])

Function Documentation

cost()

float cost	(	vector1< vector1< float > > &	quality_vs_ir,
		vector1< core::Size > &	model,
		core::Size	slen
	)

References closure_error::model.

Referenced by main().

main()

int main	(	int	argc,
		char *	argv[]
	)

References a, argv, cost(), utility::io::oc::cout, data, dist(), build_jacobian::distance, numeric::distance(), test.T009_Exceptions::e, basic::options::OptionKeys::in::file::fasta, g(), create_a3b_hbs::i, basic::init(), create_a3b_hbs::j, max(), min(), closure_error::model, surface_app::native, option, erraser_single_res_analysis::out, kic_runner::pdb, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, residue, basic::options::OptionKeys::frags::scoring::scoring, basic::options::OptionKeys::relax::sequence, and basic::options::OptionKeys::in::file::xyz.