sasa_test.cc File Reference

#include <devel/init.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/sasa.hh>
#include <numeric/random/random.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/prof.hh>
#include <core/chemical/ResidueType.hh>
#include <numeric/xyz.functions.hh>
#include <basic/options/option.hh>
#include <core/scoring/packing/surf_vol.hh>
#include <core/scoring/ScoreFunction.hh>
#include <time.h>
#include <core/import_pose/import_pose.hh>

Typedefs
typedef numeric::xyzVector< Real >	Vec
typedef utility::vector1< Vec >	Vecs
typedef numeric::xyzMatrix< Real >	Mat

Functions
void	rot_pose (core::pose::Pose &pose, Mat const &rot)
void	rot_pose (core::pose::Pose &pose, Vec const &axis, Real const &ang)
Real	dot_sasa (Pose &pose, clock_t &t)
Real	dab_sasa (Pose &pose, clock_t &t)
int	main (int argc, char *argv[])

Typedef Documentation

Mat

typedef numeric::xyzMatrix<Real> Mat

Vec

typedef numeric::xyzVector<Real> Vec

Vecs

typedef utility::vector1<Vec> Vecs

Function Documentation

dab_sasa()

Real dab_sasa	(	Pose &	pose,
		clock_t &	t
	)

References beta_nonlocal::pose, PROF_START, PROF_STOP, docking::s, basic::options::OptionKeys::out::sf, basic::STAGE2, and predPRE::t.

Referenced by main().

dot_sasa()

Real dot_sasa	(	Pose &	pose,
		clock_t &	t
	)

References beta_nonlocal::pose, PROF_START, PROF_STOP, docking::s, basic::STAGE1, and predPRE::t.

Referenced by main().

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, utility::io::oc::cerr, dab_sasa(), dot_sasa(), test.T009_Exceptions::e, create_a3b_hbs::i, basic::init(), option, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file(), basic::prof_show(), rot_pose(), docking::s, test.T900_distributed::t1, and numeric::random::uniform().

rot_pose() [1/2]

void rot_pose ( core::pose::Pose &  pose, Mat const &  rot  )

inline

References natoms(), beta_nonlocal::pose, and rot.

Referenced by main(), and rot_pose().

rot_pose() [2/2]

void rot_pose ( core::pose::Pose &  pose, Vec const &  axis, Real const &  ang  )

inline

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::ang, beta_nonlocal::pose, rot_pose(), and numeric::rotation_matrix_degrees().