#include <core/pose/util.hh>
#include <core/types.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/inout.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <basic/database/sql_utils.hh>
#include <basic/Tracer.hh>
#include <devel/init.hh>
#include <core/import_pose/import_pose.hh>
#include <core/util/SwitchResidueTypeSet.hh>
#include <utility/sql_database/DatabaseSessionManager.hh>
#include <utility/string_util.hh>
#include <utility/io/izstream.hh>
#include <utility/vector1.hh>
#include <protocols/features/ProteinSilentReport.hh>
#include <protocols/sewing/hashing/Hasher.hh>
#include <core/scoring/rms_util.hh>
#include <map>

Namespaces
	SmotifHasher

Functions
std::map< core::Size, utility::vector1< protocols::sewing::ResidueHash > >	get_models (utility::sql_database::sessionOP db_session)

void	trim_pdb (core::pose::Pose &pose, std::set< core::Size > const &residue_numbers)

void	superimpose_smotifs (utility::sql_database::sessionOP db_session, std::map< std::pair< protocols::sewing::HashValue, protocols::sewing::HashValue >, core::Size > const &scores, core::Size score_cutoff)

int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("SmotifHasher")

basic::options::IntegerOptionKey const	SmotifHasher::num_bundles ("num_bundles")

basic::options::IntegerOptionKey const	SmotifHasher::mode ("mode")

basic::options::IntegerOptionKey const	SmotifHasher::query_id ("query_id")

basic::options::IntegerOptionKey const	SmotifHasher::min_score ("min_score")

Function Documentation

◆ get_models()

std::map< core::Size, utility::vector1<protocols::sewing::ResidueHash> > get_models ( utility::sql_database::sessionOP db_session )

References val2thr::atom, runtime_assert, basic::database::safely_prepare_statement(), basic::database::safely_read_from_database(), TR, x, predPRE::y, and predPRE::z.

Referenced by main().

◆ main()

int main	(	int	argc,
		char *	argv[]
	)

References utility::options::OptionCollection::add(), argv, demo.D060_Folding::counter, basic::database::get_db_session(), get_models(), basic::init(), SmotifHasher::min_score, SmotifHasher::mode, closure_error::models, basic::options::option, SmotifHasher::query_id, legacy_score_vs_rmsd::scores, superimpose_smotifs(), basic::options::TR, and utility_exit_with_message.

◆ superimpose_smotifs()

void superimpose_smotifs	(	utility::sql_database::sessionOP	db_session,
		std::map< std::pair< protocols::sewing::HashValue, protocols::sewing::HashValue >, core::Size > const &	scores,
		core::Size	score_cutoff
	)