backrub.cc File Reference

run backrub Monte Carlo More...

#include <devel/init.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/backrub/BackrubProtocol.hh>
#include <protocols/canonical_sampling/PDBTrajectoryRecorder.hh>
#include <protocols/viewer/viewers.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/pose/Pose.hh>
#include <core/types.hh>
#include <utility/vector1.hh>
#include <utility/excn/Exceptions.hh>
#include <numeric/random/random.hh>
#include <platform/types.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/backrub.OptionKeys.gen.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>

Functions
void *	my_main (void *)
int	main (int argc, char *argv[])

Detailed Description

run backrub Monte Carlo

Author

Colin A. Smith (colin.nosp@m..smi.nosp@m.th@mp.nosp@m.ibpc.nosp@m..mpg..nosp@m.de)

Currently a work in progress. The goal is to match the features of rosetta++ -backrub_mc

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

References utility::io::oc::cout, constraints::cst_fa_file(), constraints::cst_fa_weight(), in::path::database(), in::ignore_unrecognized_res(), devel::init(), backrub::initial_pack(), in::file::l(), backrub::max_atoms(), backrub::mc_kt(), backrub::min_atoms(), backrub::minimize_movemap(), backrub::mm_bend_weight(), in::file::movemap(), utility::excn::EXCN_Base::msg(), my_main(), out::nstruct(), backrub::ntrials(), OPT, backrub::pivot_atoms(), backrub::pivot_residues(), packing::resfile(), in::file::s(), backrub::sc_prob(), backrub::sc_prob_uniform(), backrub::sc_prob_withinrot(), backrub::sm_prob(), backrub::trajectory(), backrub::trajectory_gz(), and backrub::trajectory_stride().

void * my_main

(

void *

)

Referenced by main().