coupled_moves.cc File Reference

#include <devel/init.hh>
#include <basic/Tracer.hh>
#include <basic/basic.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/simple_moves/PackRotamersMover.hh>
#include <protocols/simple_moves/CoupledMover.hh>
#include <protocols/simple_moves/MinPackMover.hh>
#include <protocols/viewer/viewers.hh>
#include <protocols/canonical_sampling/PDBTrajectoryRecorder.hh>
#include <protocols/jd2/util.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/Job.hh>
#include <protocols/jd2/InnerJob.hh>
#include <protocols/toolbox/IGEdgeReweighters.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <core/scoring/hbonds/HBondOptions.hh>
#include <core/scoring/EnergyGraph.hh>
#include <core/scoring/constraints/util.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/pack/task/residue_selector/ClashBasedRepackShellSelector.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/AtomType.hh>
#include <core/conformation/Conformation.hh>
#include <core/kinematics/FoldTree.hh>
#include <numeric/random/random.hh>
#include <numeric/angle.functions.hh>
#include <numeric/conversions.hh>
#include <numeric/xyzVector.hh>
#include <numeric/NumericTraits.hh>
#include <numeric/xyz.functions.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/backrub.OptionKeys.gen.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>

Classes
class	CoupledMovesProtocol

Typedefs
typedef utility::pointer::shared_ptr < CoupledMovesProtocol >	CoupledMovesProtocolOP

Functions
static THREAD_LOCAL basic::Tracer	TR ("apps.coupled_moves")
void *	my_main (void *)
int	main (int argc, char *argv[])

Typedef Documentation

typedef utility::pointer::shared_ptr<CoupledMovesProtocol> CoupledMovesProtocolOP

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

References utility::io::oc::cout, constraints::cst_fa_file(), constraints::cst_fa_weight(), in::path::database(), in::ignore_unrecognized_res(), devel::init(), basic::options::OptionKeys::ddg::initial_repack, basic::options::OptionKeys::backrub::mc_kt, basic::options::OptionKeys::min_pack, basic::options::OptionKeys::backrub::mm_bend_weight, utility::excn::EXCN_Base::msg(), my_main(), in::file::native(), NEW_OPT, out::nstruct(), basic::options::OptionKeys::backrub::ntrials, OPT, out::pdb_gz(), packing::resfile(), basic::options::OptionKeys::backrub::trajectory, basic::options::OptionKeys::backrub::trajectory_gz, and basic::options::OptionKeys::backrub::trajectory_stride.

void* my_main

(

void *

)

Referenced by main().

static THREAD_LOCAL basic::Tracer TR ( "apps.coupled_moves"  )

static

Referenced by CoupledMovesProtocol::apply().