MinimizerBenchmark< sft, TScale > Class Template Reference

#include <Minimizer.bench.hh>

Inheritance diagram for MinimizerBenchmark< sft, TScale >:

Public Member Functions
	MinimizerBenchmark (std::string name)
virtual void	setUp ()
virtual void	run (core::Real scaleFactor)
virtual void	tearDown ()
Public Member Functions inherited from PerformanceBenchmark
	PerformanceBenchmark (std::string name)
virtual	~PerformanceBenchmark ()
double	execute (core::Real scaleFactor)
std::string	name ()

Public Attributes
pose::PoseOP	start_pose
kinematics::MoveMap	mm
core::scoring::ScoreFunctionOP	scorefxn
core::optimization::AtomTreeMinimizer	minimizer

Additional Inherited Members
Static Public Member Functions inherited from PerformanceBenchmark
static void	executeOneBenchmark (std::string const &name, core::Real scaleFactor=1)
static void	executeAllBenchmarks (core::Real scaleFactor=1)
static std::string	getReport ()
static std::string	getOneReport (std::string const &name)

Constructor & Destructor Documentation

template<ScoreFnType sft, int TScale>

MinimizerBenchmark< sft, TScale >::MinimizerBenchmark ( std::string  name )

inline

Member Function Documentation

template<ScoreFnType sft, int TScale>

virtual void MinimizerBenchmark< sft, TScale >::run ( core::Real  scaleFactor )

inlinevirtual

Reimplemented from PerformanceBenchmark.

References app.delta_score_per_mutation::mm, options, app.surface_docking.surface_docking::pose, PyMOL_demo::scorefxn, SFT_dfpmin, SFT_dfpmin_armijo, SFT_dfpmin_armijo_nonmonotone, and app.surface_docking.surface_docking::start_pose.

template<ScoreFnType sft, int TScale>

virtual void MinimizerBenchmark< sft, TScale >::setUp ( )

inlinevirtual

Reimplemented from PerformanceBenchmark.

References pyrosetta::get_score_function, app.delta_score_per_mutation::mm, PyMOL_demo::scorefxn, and app.surface_docking.surface_docking::start_pose.

template<ScoreFnType sft, int TScale>

virtual void MinimizerBenchmark< sft, TScale >::tearDown ( )

inlinevirtual

Reimplemented from PerformanceBenchmark.

Member Data Documentation

template<ScoreFnType sft, int TScale>

core::optimization::AtomTreeMinimizer MinimizerBenchmark< sft, TScale >::minimizer

template<ScoreFnType sft, int TScale>

kinematics::MoveMap MinimizerBenchmark< sft, TScale >::mm

template<ScoreFnType sft, int TScale>

core::scoring::ScoreFunctionOP MinimizerBenchmark< sft, TScale >::scorefxn

Referenced by app.pyrosetta_toolkit.modules.protocols.AnalysisProtocols.VIP_Wrapper::apply(), pyrosetta.PyJobDistributor::output_decoy(), and src.PyJobDistributor::output_decoy().

template<ScoreFnType sft, int TScale>

pose::PoseOP MinimizerBenchmark< sft, TScale >::start_pose

---

The documentation for this class was generated from the following file:

• src/apps/benchmark/performance/Minimizer.bench.hh