SmallMoverBenchmark Class Reference

#include <SmallMover.bench.hh>

Inheritance diagram for SmallMoverBenchmark:

Public Member Functions
	SmallMoverBenchmark (std::string name)
virtual void	setUp ()
virtual void	run (core::Real scaleFactor)
virtual void	tearDown ()
Public Member Functions inherited from PerformanceBenchmark
	PerformanceBenchmark (std::string name)
virtual	~PerformanceBenchmark ()
double	execute (core::Real scaleFactor)
std::string	name ()

Public Attributes
pose::PoseOP	pose
kinematics::MoveMapOP	movemap
protocols::simple_moves::SmallMover	small_mover

Additional Inherited Members
Static Public Member Functions inherited from PerformanceBenchmark
static void	executeOneBenchmark (std::string const &name, core::Real scaleFactor=1)
static void	executeAllBenchmarks (core::Real scaleFactor=1)
static std::string	getReport ()
static std::string	getOneReport (std::string const &name)

Constructor & Destructor Documentation

SmallMoverBenchmark::SmallMoverBenchmark ( std::string  name )

inline

Member Function Documentation

virtual void SmallMoverBenchmark::run ( core::Real  scaleFactor )

inlinevirtual

Reimplemented from PerformanceBenchmark.

References app.surface_docking.surface_docking::pose, and test.Workshop5test::small_mover.

virtual void SmallMoverBenchmark::setUp ( )

inlinevirtual

Reimplemented from PerformanceBenchmark.

References basic::options::OptionKeys::in::file::movemap, app.surface_docking.surface_docking::pose, and test.Workshop5test::small_mover.

virtual void SmallMoverBenchmark::tearDown ( )

inlinevirtual

Reimplemented from PerformanceBenchmark.

References basic::options::OptionKeys::in::file::movemap, and app.surface_docking.surface_docking::pose.

Member Data Documentation

kinematics::MoveMapOP SmallMoverBenchmark::movemap

Referenced by app.surface_docking.movers.FullAtomRelax::_setupMovemap(), and app.surface_docking.movers.FullAtomRelax::_setupTrial().

pose::PoseOP SmallMoverBenchmark::pose

Referenced by app.pyrosetta_toolkit.window_modules.pymol_integration.PyMOL.AdvancedPyMOL::__init__(), app.pyrosetta_toolkit.modules.protocols.ProtocolBaseClass.ProtocolBaseClass::_run_mover(), app.pyrosetta_toolkit.window_main.frames.InputFrame.InputFrame::add_region(), app.pyrosetta_toolkit.window_modules.pymol_integration.PyMOL.AdvancedPyMOL::color_region(), app.pyrosetta_toolkit.window_main.frames.InputFrame.InputFrame::color_region_from_entry(), app.pyrosetta_toolkit.window_modules.pymol_integration.PyMOL.AdvancedPyMOL::color_regions(), app.pyrosetta_toolkit.window_modules.pymol_integration.PyMOL.AdvancedPyMOL::color_residue(), app.pyrosetta_toolkit.modules.protocols.HighResLoopModelingProtocols.HighResLoopModelingProtocols::default_CCD(), app.pyrosetta_toolkit.modules.protocols.LowResLoopModelingProtocols.LowResLoopModelingProtocols::default_CCD(), app.pyrosetta_toolkit.modules.protocols.HighResLoopModelingProtocols.HighResLoopModelingProtocols::default_KIC(), app.pyrosetta_toolkit.modules.protocols.LowResLoopModelingProtocols.LowResLoopModelingProtocols::default_KIC(), app.pyrosetta_toolkit.modules.protocols.DesignProtocols.DesignProtocols::design_residue(), app.pyrosetta_toolkit.modules.protocols.DockingProtocols.DockingProtocols::high_res_dock(), app.pyrosetta_toolkit.modules.protocols.MinimizationProtocols.MinimizationProtocols::LoopBackrubRef(), app.pyrosetta_toolkit.window_modules.scorefunction.ScoreFxnControl.ScoreFxnControl::makeWindow(), app.pyrosetta_toolkit.modules.protocols.MinimizationProtocols.MinimizationProtocols::minimize(), app.pyrosetta_toolkit.window_modules.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager::mutate(), app.pyrosetta_toolkit.modules.protocols.DesignProtocols.DesignProtocols::mutateRes(), app.pyrosetta_toolkit.modules.protocols.MinimizationProtocols.MinimizationProtocols::optimize_rotamers(), app.pyrosetta_toolkit.modules.protocols.ProtocolBaseClass.ProtocolBaseClass::output_pose(), app.pyrosetta_toolkit.modules.protocols.DesignProtocols.DesignProtocols::pack_residue(), app.pyrosetta_toolkit.pyrosetta_toolkit.main_window::print_numbering(), app.pyrosetta_toolkit.window_main.IO.GUIInput.GUIInput::reinit_regions_on_new_pose(), app.pyrosetta_toolkit.modules.protocols.MinimizationProtocols.MinimizationProtocols::relax(), app.pyrosetta_toolkit.modules.protocols.MinimizationProtocols.MinimizationProtocols::relax_bb_only(), app.pyrosetta_toolkit.modules.protocols.MinimizationProtocols.MinimizationProtocols::relax_residue_and_neighbors(), app.pyrosetta_toolkit.window_modules.full_control.FullControlWindow.FullControlWindow::remove_variant(), app.pyrosetta_toolkit.modules.RegionalScoring.RegionalScoring::ret_energy_string(), app.pyrosetta_toolkit.modules.RegionalScoring.RegionalScoring::ret_loop_neighbor_energy(), app.pyrosetta_toolkit.modules.RegionalScoring.RegionalScoring::ret_loop_neighbor_energy_by_type(), app.pyrosetta_toolkit.modules.RegionalScoring.RegionalScoring::ret_n_hbonds(), app.pyrosetta_toolkit.modules.protocols.GraftingProtocols.GraftMoverWindow::run_graft(), app.pyrosetta_toolkit.window_modules.scorefunction.ScoreFxnControl.ScoreFxnControl::scoreOption(), app.pyrosetta_toolkit.modules.protocols.MinimizationProtocols.MinimizationProtocols::SCWRL(), app.pyrosetta_toolkit.window_modules.pymol_integration.PyMOL.AdvancedPyMOL::SendPose(), app.pyrosetta_toolkit.modules.protocols.FloppyTailProtocol.FloppyTailProtocol::setup_mover_and_run(), app.pyrosetta_toolkit.window_main.frames.InputFrame.InputFrame::show_sequence(), app.pyrosetta_toolkit.window_modules.full_control.FullControlWindow.FullControlWindow::show_window(), pyrosetta.toolbox.generate_resfile.ResfileWriter::write_resfile(), and toolbox.generate_resfile.ResfileWriter::write_resfile().

protocols::simple_moves::SmallMover SmallMoverBenchmark::small_mover

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The documentation for this class was generated from the following file:

• src/apps/benchmark/performance/SmallMover.bench.hh