fast_gap.cc File Reference

#include <core/types.hh>
#include <core/init/init.hh>
#include <basic/Tracer.hh>
#include <core/chemical/util.hh>
#include <basic/options/option.hh>
#include <core/sequence/util.hh>
#include <core/sequence/Sequence.hh>
#include <core/sequence/SequenceAlignment.hh>
#include <core/sequence/NWAligner.hh>
#include <core/sequence/ScoringScheme.fwd.hh>
#include <core/sequence/SimpleScoringScheme.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/kinematics/MoveMap.fwd.hh>
#include <core/import_pose/pose_stream/util.hh>
#include <core/import_pose/pose_stream/MetaPoseInputStream.hh>
#include <core/import_pose/PDBSilentStruct.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/conformation/Conformation.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/fragment/FragSet.hh>
#include <core/fragment/FragSet.fwd.hh>
#include <protocols/relax/MiniRelax.hh>
#include <protocols/loophash/FastGapMover.hh>
#include <protocols/comparative_modeling/ThreadingMover.hh>
#include <utility/vector1.hh>
#include <utility/io/ozstream.hh>
#include <utility/excn/Exceptions.hh>
#include <string>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/relax.OptionKeys.gen.hh>
#include <core/pose/annotated_sequence.hh>
#include <utility/vector0.hh>

Functions
void	restore_hack (core::pose::Pose &pose)
int	main (int argc, char *argv[])

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

References basic::options::OptionKeys::chemical::chemical, utility::io::ozstream::close(), utility::io::oc::cout, basic::Tracer::Debug, basic::options::OptionKeys::matdes::dock::dump_pdb, basic::options::OptionKeys::in::file::fasta, basic::init(), app.surface_docking.surface_docking::input, utility::excn::EXCN_Base::msg(), basic::options::option, options, basic::options::OptionKeys::cp::output, loops::pack, basic::options::OptionKeys::frags::scoring::scoring, basic::options::OptionKeys::relax::sequence, basic::options::OptionKeys::mh::match::ss, app.surface_docking.surface_docking::start_pose, and tr().

void restore_hack

(

core::pose::Pose &

pose

)

References basic::options::OptionKeys::mh::match::ss.