#include <core/pose/annotated_sequence.hh>
#include <core/chemical/AtomTypeSet.hh>
#include <core/chemical/MMAtomTypeSet.hh>
#include <core/chemical/AA.hh>
#include <core/conformation/Residue.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/scoring/etable/Etable.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/Ramachandran.hh>
#include <core/pack/dunbrack/RotamerLibrary.hh>
#include <core/scoring/hbonds/HBondSet.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/id/AtomID_Map.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/pose/Pose.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/database/open.hh>
#include <core/io/pdb/build_pose_as_is.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <utility/stream_util.hh>
#include <basic/Tracer.hh>
#include <basic/basic.hh>
#include <devel/init.hh>
#include <core/types.hh>
#include <utility/vector1.hh>
#include <utility/excn/Exceptions.hh>
#include <numeric/xyzVector.hh>
#include <ObjexxFCL/format.hh>
#include <ObjexxFCL/string.functions.hh>
#include <fstream>
#include <iostream>
#include <string>
#include <core/pose/signals/GeneralEvent.hh>
#include <core/import_pose/import_pose.hh>

Classes
class	PosePyObserver

Typedefs
typedef std::map< std::string, std::map< std::string, numeric::xyzVector< Real > > >	Coords

typedef vector1< std::string >	Strings

Functions
std::string	readFile (std::string fname)

int	main (int argc, char *argv[])

Typedef Documentation

◆ Coords

typedef std::map< std::string, std::map< std::string, numeric::xyzVector< Real > > > Coords

◆ Strings

typedef vector1< std::string > Strings

Function Documentation

◆ main()

int main	(	int	argc,
		char *	argv[]
	)

References spectral_cluster_kmeans_adaptive_kernel_density_bb_dependent_rotlib::A, argv, utility::io::oc::cout, data, test.T009_Exceptions::e, basic::Error(), create_a3b_hbs::i, basic::init(), PosePyObserver::link(), beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, readFile(), basic::options::OptionKeys::in::file::residue_type_set, oop_conformations::scorefxn, basic::options::OptionKeys::relax::sequence, pyrosetta.distributed.cluster.exceptions::T, basic::t_error, and basic::Warning().

◆ readFile()

std::string readFile ( std::string fname )

References utility::io::oc::cout, evaluate_beta_mutants::file, PREcst::fname, basic::options::OptionKeys::in::in, and res.

Referenced by main().

Classes