numeric::xyzVector< T > Class Template Reference

xyzVector: Fast (x,y,z)-coordinate numeric vector More...

#include <xyzVector.hh>

Inheritance diagram for numeric::xyzVector< T >:

Public Types
typedef T	Value
typedef T &	Reference
typedef T const &	ConstReference
typedef T *	Pointer
typedef T const *	ConstPointer
typedef T	value_type
typedef T &	reference
typedef T const &	const_reference
typedef T *	pointer
typedef T const *	const_pointer
typedef void	iterator_category
typedef void	difference_type

Public Member Functions
	xyzVector ()
	Default constructor. More...
	xyzVector (xyzVector const &v)
	Copy constructor. More...
template<typename U >
	xyzVector (xyzVector< U > const &v)
	Copy constructor. More...
	xyzVector (Value const &t)
	Uniform value constructor. More...
	xyzVector (Value const &x_a, Value const &y_a, Value const &z_a)
	Triple value constructor. More...
template<typename U >
	xyzVector (U const *p)
	Pointer to contiguous values constructor. More...
	~xyzVector ()
	Destructor. More...
xyzVector &	operator= (xyzVector const &v)
	Copy assignment. More...
template<typename U >
xyzVector &	operator= (xyzVector< U > const &v)
	Copy assignment. More...
template<typename U >
xyzVector &	operator= (U const *p)
	Assignment from pointer to contiguous values. More...
template<typename U >
xyzVector &	operator+= (xyzVector< U > const &v)
	+= xyzVector More...
template<typename U >
xyzVector &	operator-= (xyzVector< U > const &v)
	-= xyzVector More...
template<typename U >
xyzVector &	scaled_assign (Value const &t, xyzVector< U > const &v)
	Assign Value * xyzVector. More...
template<typename U >
xyzVector &	scaled_add (Value const &t, xyzVector< U > const &v)
	Add Value * xyzVector. More...
template<typename U >
xyzVector &	scaled_sub (Value const &t, xyzVector< U > const &v)
	Subtract Value * xyzVector. More...
xyzVector &	operator= (Value const &t)
	= Value More...
xyzVector &	operator+= (Value const &t)
	+= Value More...
xyzVector &	operator-= (Value const &t)
	-= Value More...
xyzVector &	operator*= (Value const &t)
	*= Value More...
xyzVector &	operator/= (Value const &t)
	/= Value More...
xyzVector &	assign (Value const &x_a, Value const &y_a, Value const &z_a)
	Triple value assignment. More...
bool	is_finite () const
	Test if there's any non-finite (inf, NAN) values in the vector. More...
std::string	to_string () const
	to_string, useful for utility exits More...
xyzVector &	clear ()
	Clear. More...
xyzVector &	zero ()
	Zero. More...
xyzVector &	negate ()
	Negate. More...
xyzVector	operator- () const
	-xyzVector (negated copy) More...
xyzVector	negated () const
	Negated copy. More...
void	negated (xyzVector &a) const
	Negated: Return via argument (slightly faster) More...
xyzVector &	min (xyzVector const &v)
	Set minimum coordinates wrt another xyzVector. More...
xyzVector &	max (xyzVector const &v)
	Set maximum coordinates wrt another xyzVector. More...
xyzVector &	normalize ()
	Normalize. More...
T	minimum_value () const
	get the lowest of the three values in the vector More...
T	maximum_value () const
	get the highest of the three values in the vector More...
void	normalized (xyzVector &a) const
	Normalized. More...
xyzVector &	normalize_or_zero ()
	Normalize: zero xyzVector if length is zero. More...
void	normalized_or_zero (xyzVector &a) const
	Normalized: zero xyzVector if length is zero. More...
xyzVector &	normalize_any ()
	Normalize: arbitrary normalized xyzVector if length is zero. More...
void	normalized_any (xyzVector &a) const
	Normalized: arbitrary normalized xyzVector if length is zero. More...
xyzVector &	normalize (Value const &length_a)
	Normalize to a length. More...
void	normalized (Value const &length_a, xyzVector &a) const
	Normalized to a length. More...
xyzVector &	normalize_or_zero (Value const &length_a)
	Normalize to a length: zero xyzVector if length is zero. More...
void	normalized_or_zero (Value const &length_a, xyzVector &a) const
	Normalized to a length: zero xyzVector if length is zero. More...
xyzVector &	normalize_any (Value const &length_a)
	Normalize to a length: arbitrary normalized xyzVector if length is zero. More...
void	normalized_any (Value const &length_a, xyzVector &a) const
	Normalized to a length: arbitrary normalized xyzVector if length is zero. More...
xyzVector	normalized () const
	Normalized copy. More...
xyzVector	normalized_or_zero () const
	Normalized copy: Zero xyzVector if length is zero. More...
xyzVector	normalized_any () const
	Normalized copy: Arbitrary normalized xyzVector if length is zero. More...
xyzVector	normalized (Value const &length_a) const
	Normalized to a length copy. More...
xyzVector	normalized_or_zero (Value const &length_a) const
	Normalized to a length copy: Zero xyzVector if length is zero. More...
xyzVector	normalized_any (Value const &length_a) const
	Normalized to a length copy: Arbitrary normalized xyzVector if length is zero. More...
xyzVector &	project_normal (xyzVector const &v)
	Project normal. More...
xyzVector	projected_normal (xyzVector const &v) const
	Projected normal copy. More...
void	projected_normal (xyzVector const &v, xyzVector &a) const
	Projected normal. More...
xyzVector &	project_parallel (xyzVector const &v)
	Project parallel. More...
xyzVector	projected_parallel (xyzVector const &v) const
	Projected parallel copy. More...
void	projected_parallel (xyzVector const &v, xyzVector &a)
	Projected parallel. More...
Value	distance (xyzVector const &v) const
	Distance. More...
Value	distance_squared (xyzVector const &v) const
	Distance. More...
Value	dot (xyzVector const &v) const
	Distance squared. More...
Value	dot_product (xyzVector const &v) const
	Dot product. More...
Value	inner_product (xyzVector const &v) const
	Inner product ( == dot product ) More...
xyzVector	cross (xyzVector const &v) const
	Cross product. More...
xyzVector	cross_product (xyzVector const &v) const
	Cross product. More...
bool	is_zero () const
	Is zero? More...
bool	is_normalized () const
	Is exactly normalized? More...
bool	is_normalized (Value const &tol) const
	Is normalized to within a tolerance? More...
bool	is_unit () const
	Is exactly a unit vector? More...
bool	is_unit (Value const &tol) const
	Is a unit vector to within a tolerance? More...
Value const &	x () const
	Value x const. More...
Value &	x ()
	Value x. More...
Value const &	y () const
	Value y const. More...
Value &	y ()
	Value y. More...
Value const &	z () const
	Value z const. More...
Value &	z ()
	Value z. More...
Value	length () const
	Length. More...
Value	length_squared () const
	Length squared. More...
Value	norm () const
	Norm. More...
Value	norm_squared () const
	Norm squared. More...
Value	magnitude () const
	Magnitude. More...
Value	magnitude_squared () const
	Magnitude squared. More...
void	x (Value const &x_a)
	x assignment More...
void	y (Value const &y_a)
	y assignment More...
void	z (Value const &z_a)
	z assignment More...
Value const &	operator[] (int const i) const
	xyzVector[ i ] const: 0-based index More...
Value &	operator[] (int const i)
	xyzVector[ i ]: 0-based index More...
Value const &	operator() (int const i) const
	xyzVector( i ) const: 1-based index More...
Value &	operator() (int const i)
	xyzVector( i ): 1-based index More...
bool	equal_length (xyzVector const &v)
	Equal length? More...
bool	not_equal_length (xyzVector const &v)
	Not equal length? More...
template<typename U >
bool	not_equal_length (xyzVector< U > const &a, xyzVector< U > const &b)
	Not equal length? More...
bool	longer (xyzVector const &v)
	Longer? More...
bool	longer_or_equal (xyzVector const &v)
	Longer or equal length? More...
bool	shorter (xyzVector const &v)
	Shorter? More...
bool	shorter_or_equal (xyzVector const &v)
	Shorter or equal length? More...

Static Private Member Functions
static Value	square (Value const &t)
	square( t ) == t * t More...

Private Attributes
Value	x_
	Coordinates of the 3 coordinate vector. More...
Value	y_
Value	z_

Friends
template<typename >
class	xyzVector
template<typename >
class	xyzMatrix
xyzVector< T >	operator* (xyzMatrix< T > const &m, xyzVector< T > const &v)
xyzVector< T >	product (xyzMatrix< T > const &m, xyzVector< T > const &v)
	xyzMatrix * xyzVector product More...
xyzVector< T > &	inplace_product (xyzMatrix< T > const &m, xyzVector< T > &v)
	xyzMatrix * xyzVector in-place product More...
xyzVector< T >	transpose_product (xyzMatrix< T > const &m, xyzVector< T > const &v)
	xyzMatrix^T * xyzVector product More...
xyzVector< T > &	inplace_transpose_product (xyzMatrix< T > const &m, xyzVector< T > &v)
	xyzMatrix^T * xyzVector in-place transpose product More...
xyzMatrix< T >	outer_product (xyzVector< T > const &a, xyzVector< T > const &b)
	xyzVector xyzVector outer product More...
xyzMatrix< T >	projection_matrix (xyzVector< T > const &v)
	geometric center More...
xyzMatrix< T >	rotation_matrix (xyzVector< T > const &axis, T const &theta)
	Rotation matrix for rotation about an axis by an angle in radians. More...
xyzVector	operator+ (xyzVector const &a, xyzVector const &b)
	xyzVector + xyzVector More...
xyzVector	operator- (xyzVector const &a, xyzVector const &b)
	xyzVector - xyzVector More...
xyzVector	operator+ (xyzVector const &v, Value const &t)
	xyzVector + Value More...
xyzVector	operator+ (Value const &t, xyzVector const &v)
	Value + xyzVector. More...
xyzVector	operator- (xyzVector const &v, Value const &t)
	xyzVector - Value More...
xyzVector	operator- (Value const &t, xyzVector const &v)
	Value - xyzVector. More...
xyzVector	operator* (xyzVector const &v, Value const &t)
	xyzVector * Value More...
xyzVector	operator* (Value const &t, xyzVector const &v)
	Value * xyzVector. More...
xyzVector	operator/ (xyzVector const &v, Value const &t)
	xyzVector / Value More...
template<typename U >
void	add (xyzVector< U > const &a, xyzVector< U > const &b, xyzVector< U > &r)
	Add: xyzVector + xyzVector. More...
template<typename U >
void	add (xyzVector< U > const &v, U const &t, xyzVector< U > &r)
	Add: xyzVector + Value. More...
template<typename U >
void	add (U const &t, xyzVector< U > const &v, xyzVector< U > &r)
	Add: Value + xyzVector. More...
template<typename U >
void	subtract (xyzVector< U > const &a, xyzVector< U > const &b, xyzVector< U > &r)
	Subtract: xyzVector - xyzVector. More...
template<typename U >
void	subtract (xyzVector< U > const &v, U const &t, xyzVector< U > &r)
	Subtract: xyzVector - Value. More...
template<typename U >
void	subtract (U const &t, xyzVector< U > const &v, xyzVector< U > &r)
	Subtract: Value - xyzVector. More...
template<typename U >
void	multiply (xyzVector< U > const &v, U const &t, xyzVector< U > &r)
	Multiply: xyzVector * Value. More...
template<typename U >
void	multiply (U const &t, xyzVector< U > const &v, xyzVector< U > &r)
	Multiply: Value * xyzVector. More...
template<typename U >
void	divide (xyzVector< U > const &v, U const &t, xyzVector< U > &r)
	Divide: xyzVector / Value. More...
template<typename U >
xyzVector< U >	min (xyzVector< U > const &a, xyzVector< U > const &b)
	xyzVector with min coordinates of two xyzVectors More...
template<typename U >
xyzVector< U >	max (xyzVector< U > const &a, xyzVector< U > const &b)
	xyzVector with max coordinates of two xyzVectors More...
template<typename U >
U	dot (xyzVector< U > const &a, xyzVector< U > const &b)
	Dot product. More...
template<typename U >
U	dot_product (xyzVector< U > const &a, xyzVector< U > const &b)
	Dot product. More...
template<typename U >
U	inner_product (xyzVector< U > const &a, xyzVector< U > const &b)
	Inner product ( == dot product ) More...
template<typename U >
xyzVector< U >	cross (xyzVector< U > const &a, xyzVector< U > const &b)
	Cross product. More...
template<typename U >
xyzVector< U >	cross_product (xyzVector< U > const &a, xyzVector< U > const &b)
	Cross product. More...
template<typename U >
void	cross (xyzVector< U > const &a, xyzVector< U > const &b, xyzVector< U > &c)
	Cross product: Return via argument (slightly faster) More...
template<typename U >
void	cross_product (xyzVector< U > const &a, xyzVector< U > const &b, xyzVector< U > &c)
	Cross product: Return via argument (slightly faster) More...
template<typename U >
xyzVector< U >	midpoint (xyzVector< U > const &a, xyzVector< U > const &b)
	Midpoint of 2 xyzVectors. More...
template<typename U >
void	midpoint (xyzVector< U > const &a, xyzVector< U > const &b, xyzVector< U > &m)
	Midpoint of 2 xyzVectors: Return via argument (slightly faster) More...
template<typename U >
xyzVector< U >	center (xyzVector< U > const &a, xyzVector< U > const &b)
	Center of 2 xyzVectors. More...
template<typename U >
void	center (xyzVector< U > const &a, xyzVector< U > const &b, xyzVector< U > &m)
	Center of 2 xyzVectors: Return via argument (slightly faster) More...
template<typename U >
xyzVector< U >	center (xyzVector< U > const &a, xyzVector< U > const &b, xyzVector< U > const &c)
	Center of 3 xyzVectors. More...
template<typename U >
void	center (xyzVector< U > const &a, xyzVector< U > const &b, xyzVector< U > const &c, xyzVector< U > &m)
	Center of 3 xyzVectors: Return via argument (slightly faster) More...
template<typename U >
xyzVector< U >	center (xyzVector< U > const &a, xyzVector< U > const &b, xyzVector< U > const &c, xyzVector< U > const &d)
	Center of 4 xyzVectors. More...
template<typename U >
void	center (xyzVector< U > const &a, xyzVector< U > const &b, xyzVector< U > const &c, xyzVector< U > const &d, xyzVector< U > &m)
	Center of 4 xyzVectors: Return via argument (slightly faster) More...
template<typename U >
xyzVector< U >	update_operation (xyzVector< U > const &a, xyzVector< U > const &b)
template<typename U >
xyzVector< U >	update_5way_operation (xyzVector< U > const &a, xyzVector< U > const &b, xyzVector< U > const &c, xyzVector< U > const &d, xyzVector< U > const &e)
bool	operator== (xyzVector const &a, xyzVector const &b)
	xyzVector == xyzVector More...
bool	operator!= (xyzVector const &a, xyzVector const &b)
	xyzVector != xyzVector More...
bool	operator< (xyzVector const &a, xyzVector const &b)
	xyzVector < xyzVector More...
bool	operator<= (xyzVector const &a, xyzVector const &b)
	xyzVector <= xyzVector More...
bool	operator>= (xyzVector const &a, xyzVector const &b)
	xyzVector >= xyzVector More...
bool	operator> (xyzVector const &a, xyzVector const &b)
	xyzVector > xyzVector More...
bool	operator== (xyzVector const &v, Value const &t)
	xyzVector == Value More...
bool	operator!= (xyzVector const &v, Value const &t)
	xyzVector != Value More...
bool	operator< (xyzVector const &v, Value const &t)
	xyzVector < Value More...
bool	operator<= (xyzVector const &v, Value const &t)
	xyzVector <= Value More...
bool	operator>= (xyzVector const &v, Value const &t)
	xyzVector >= Value More...
bool	operator> (xyzVector const &v, Value const &t)
	xyzVector > Value More...
bool	operator== (Value const &t, xyzVector const &v)
	Value == xyzVector. More...
bool	operator!= (Value const &t, xyzVector const &v)
	Value != xyzVector. More...
bool	operator< (Value const &t, xyzVector const &v)
	Value < xyzVector. More...
bool	operator<= (Value const &t, xyzVector const &v)
	Value <= xyzVector. More...
bool	operator>= (Value const &t, xyzVector const &v)
	Value >= xyzVector. More...
bool	operator> (Value const &t, xyzVector const &v)
	Value > xyzVector. More...
template<typename U >
bool	equal_length (xyzVector< U > const &a, xyzVector< U > const &b)
	Equal length? More...

Detailed Description

template<typename T>
class numeric::xyzVector< T >

xyzVector: Fast (x,y,z)-coordinate numeric vector

Member Typedef Documentation

const_pointer

template<typename T >

typedef T const* numeric::xyzVector< T >::const_pointer

const_reference

template<typename T >

typedef T const& numeric::xyzVector< T >::const_reference

ConstPointer

template<typename T >

typedef T const* numeric::xyzVector< T >::ConstPointer

ConstReference

template<typename T >

typedef T const& numeric::xyzVector< T >::ConstReference

difference_type

template<typename T >

typedef void numeric::xyzVector< T >::difference_type

iterator_category

template<typename T >

typedef void numeric::xyzVector< T >::iterator_category

Pointer

template<typename T >

typedef T* numeric::xyzVector< T >::Pointer

pointer

template<typename T >

typedef T* numeric::xyzVector< T >::pointer

Reference

template<typename T >

typedef T& numeric::xyzVector< T >::Reference

reference

template<typename T >

typedef T& numeric::xyzVector< T >::reference

Value

template<typename T >

typedef T numeric::xyzVector< T >::Value

value_type

template<typename T >

typedef T numeric::xyzVector< T >::value_type

Constructor & Destructor Documentation

xyzVector() [1/6]

template<typename T >

numeric::xyzVector< T >::xyzVector ( )

inline

Default constructor.

Note

Values are uninitialized for efficiency

xyzVector() [2/6]

template<typename T >

numeric::xyzVector< T >::xyzVector ( xyzVector< T > const &  v )

inline

Copy constructor.

xyzVector() [3/6]

template<typename T >

template<typename U >

numeric::xyzVector< T >::xyzVector ( xyzVector< U > const &  v )

inline

Copy constructor.

xyzVector() [4/6]

template<typename T >

numeric::xyzVector< T >::xyzVector ( Value const &  t )

inlineexplicit

Uniform value constructor.

xyzVector() [5/6]

template<typename T >

numeric::xyzVector< T >::xyzVector ( Value const &  x_a, Value const &  y_a, Value const &  z_a  )

inline

Triple value constructor.

xyzVector() [6/6]

template<typename T >

template<typename U >

numeric::xyzVector< T >::xyzVector ( U const *  p )

inlineexplicit

Pointer to contiguous values constructor.

Note

U must be assignable to a Value

Warning

No way to check that argument points to three values

Argument missing an & operator will quietly call the uniform value constructor

~xyzVector()

template<typename T >

numeric::xyzVector< T >::~xyzVector ( )

inline

Destructor.

Member Function Documentation

assign()

template<typename T >

xyzVector& numeric::xyzVector< T >::assign ( Value const &  x_a, Value const &  y_a, Value const &  z_a  )

inline

Triple value assignment.

References numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

Referenced by read_embeddings(), read_membrane(), and numeric::crick_equations::XYZ_BUNDLE().

clear()

template<typename T >

xyzVector& numeric::xyzVector< T >::clear ( )

inline

Clear.

References numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

Referenced by pyrosetta.bindings.pose.ResidueLabelAccessor::discard().

cross()

template<typename T >

xyzVector numeric::xyzVector< T >::cross ( xyzVector< T > const &  v ) const

inline

Cross product.

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::v, numeric::xyzVector< T >::x_, numeric::xyzVector< T >::xyzVector, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

Referenced by TCDock::__dock_base__(), numeric::xyzTransform< T >::align(), Tet4HMatchAligner::align_rot(), alignaxis(), MatchSet::cross(), numeric::deriv::distance_f1_f2_deriv(), dock(), generate_from_fiber(), numeric::HomogeneousTransform< T >::HomogeneousTransform(), ik_arg_asp_frnt(), ik_arg_asp_side(), ik_arg_glu_frnt(), ik_arg_glu_side(), ik_his_clamp(), main(), numeric::geometry::make_plane_from_three_points(), KinFunGroupTK::place_c(), run(), run_diiron_glu(), run_m8(), Arch::slide_axis(), test_chi_xform(), testone(), visualize(), and wriggle_test().

cross_product()

template<typename T >

xyzVector numeric::xyzVector< T >::cross_product ( xyzVector< T > const &  v ) const

inline

Cross product.

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::v, numeric::xyzVector< T >::x_, numeric::xyzVector< T >::xyzVector, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

Referenced by get_angles().

distance()

template<typename T >

Value numeric::xyzVector< T >::distance ( xyzVector< T > const &  v ) const

inline

Distance.

References numeric::xyzVector< T >::square(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::v, numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

Referenced by BuriedUnsatPolarsFinder::acc_geom_check(), add_deviations(), Tet4HMatchAligner::align_info(), xtal_water_bunsat::atomid_is_contacting_crystallographic_water(), calculate_hASA_by_type_and_attractiveE(), HbondZincBackbone::carbonyl_hbond_search(), PoseWrap::check_scattach_res(), xtal_water_bunsat::closest_crystallographic_water_dist(), HbondZinc::constrain_zinc(), dna_nbr_radii_test(), BuriedUnsatPolarsFinder::don_geom_check(), zinc2_homodimer_setup::filter_clashes(), find_centerest_residue(), find_dsf(), find_next_repeat_inflection_point(), get_change_in_distance(), myspace::get_touched_res(), get_zn_axes(), HbondZinc::hbond_constraint(), hyd_petf_sf4_dis(), GlycanClashCheckMover::is_clashing(), loop_modeling_test(), main(), BuriedUnsatPolarsFinder::metal_check(), TCDock::min_termini_dis(), passes_quality_check(), phosphate_stats(), psI_petf_sf4_dis(), apps::pilot::momeara::HBondConformation::relax_pose_around_hbond(), run(), run_pep_prep(), run_tyr_his(), BuriedUnsatPolarsFinder::sulphur_bond_check(), and apps::public1::scenarios::chemically_conjugated_docking::ubq_ras_rotation_angle().

distance_squared()

template<typename T >

Value numeric::xyzVector< T >::distance_squared ( xyzVector< T > const &  v ) const

inline

Distance.

Distance squared

References numeric::xyzVector< T >::square(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::v, numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

Referenced by RDF_Mover::apply(), brt_clash(), MatchSet::c2_linker_check_dist(), collect_stats(), compare_gpu_result_against_cpu(), MatchSet::cross(), MatchSet::cross_homodimer(), design_dyad(), dock(), fast_clash_check(), find_dsf(), get_aligned_crd(), get_atom_lk_energy_by_residue_no_count_pair(), TCDock::get_best_sub1_contact_delta_rotations(), CrystFFTDock::get_interfaces_allatom(), get_radius(), numeric::VoxelGrid< T >::GetNeighbors1D(), numeric::VoxelGrid< T >::GetNeighborsMultiDimensional(), numeric::VoxelGrid< T >::HasNeighbors1D(), numeric::VoxelGrid< T >::HasNeighborsMultiDimensional(), hbond_stats(), numeric::HomogeneousTransform< T >::HomogeneousTransform(), is_hbond(), main(), motif_score_pose(), myxdis(), BruteFunGroupTK::place_c(), BruteRotSel::place_n(), KinRotSel::place_n(), place_sf4(), place_zns(), CapriTwoBodyEnergy::residue_pair_energy(), run(), run_diiron_glu(), run_m8(), run_tyr_his(), run_zn2his(), CapriTotalEnergy::score_experimental_constraints(), slow_clash(), slow_nbcount(), slow_nbset(), SphereGrinder(), and TEST().

dot()

template<typename T >

Value numeric::xyzVector< T >::dot ( xyzVector< T > const &  v ) const

inline

Distance squared.

Dot product

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::v, numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

Referenced by Tet4HMatchAligner::align_info(), Tet4HMatchAligner::align_rot(), alignaxis(), numeric::geometry::are_coplanar(), cone_cen_nc_calculator(), cone_FA_nc_anyatom_calculator(), cone_FA_nc_calculator(), count_neighbors(), MatchSet::cross(), decompose(), dock(), generate_from_fiber(), get_base_pucker(), numeric::HomogeneousTransform< T >::HomogeneousTransform(), ik_his_clamp(), line_cone_intersection(), main(), KinRotSel::place_n(), pointGroupHit::pointGroupHit(), project_line(), numeric::xyzVector< T >::project_normal(), numeric::xyzVector< T >::project_parallel(), numeric::xyzVector< T >::projected_normal(), numeric::xyzVector< T >::projected_parallel(), numeric::geometry::residual_squared_of_points_to_plane(), run(), run_diiron_glu(), run_m8(), run_sf4h(), run_tyr_his(), run_zn2his(), and wriggle_test().

dot_product()

template<typename T >

Value numeric::xyzVector< T >::dot_product ( xyzVector< T > const &  v ) const

inline

Dot product.

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::v, numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

Referenced by myspace::find_best_projection(), get_angles(), and myspace::is_contacting().

equal_length()

template<typename T >

bool numeric::xyzVector< T >::equal_length ( xyzVector< T > const &  v )

inline

Equal length?

References numeric::xyzVector< T >::length_squared(), and kmeans_adaptive_kernel_density_bb_dependent_rotlib::v.

inner_product()

template<typename T >

Value numeric::xyzVector< T >::inner_product ( xyzVector< T > const &  v ) const

inline

Inner product ( == dot product )

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::v, numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

is_finite()

template<typename T >

bool numeric::xyzVector< T >::is_finite ( ) const

inline

Test if there's any non-finite (inf, NAN) values in the vector.

References utility::isfinite(), numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

is_normalized() [1/2]

template<typename T >

bool numeric::xyzVector< T >::is_normalized ( ) const

inline

Is exactly normalized?

References numeric::xyzVector< T >::length_squared().

is_normalized() [2/2]

template<typename T >

bool numeric::xyzVector< T >::is_normalized ( Value const &  tol ) const

inline

Is normalized to within a tolerance?

References numeric::xyzVector< T >::length_squared(), and loops_kic::tol.

is_unit() [1/2]

template<typename T >

bool numeric::xyzVector< T >::is_unit ( ) const

inline

Is exactly a unit vector?

References numeric::xyzVector< T >::length_squared().

Referenced by numeric::ccd_angle().

is_unit() [2/2]

template<typename T >

bool numeric::xyzVector< T >::is_unit ( Value const &  tol ) const

inline

Is a unit vector to within a tolerance?

References numeric::xyzVector< T >::length_squared(), and loops_kic::tol.

is_zero()

template<typename T >

bool numeric::xyzVector< T >::is_zero ( ) const

inline

Is zero?

References numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

Referenced by numeric::alignVectorSets(), and numeric::random::random_normal().

length()

template<typename T >

Value numeric::xyzVector< T >::length ( ) const

inline

Length.

References numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

Referenced by Tet4HMatchAligner::align_rot(), align_sf4(), align_zns(), numeric::deriv::angle_p1_deriv(), numeric::deriv::angle_p1_p2_p3_deriv(), enumerate_junctions.Design::attach_valid(), numeric::ccd_angle(), ch_o_pdbstats_from_pose(), check_jump(), numeric::deriv::dihedral_p1_cosine_deriv_first(), numeric::deriv::dihedral_p2_cosine_deriv_first(), dock(), TCDock::dump_pdb(), HelixHit::frame(), generate_from_fiber(), numeric::UniformRotationSampler::generateIcosahedralSamples(), get_contacts(), CrystFFTDock::get_interfaces_allatom(), get_RNA_binding_residues(), ik_his_clamp(), MatchLig::isbad(), main(), mg_pdbstats_from_pose(), MPframeworkTest1Mover::move_together(), numeric::xyzVector< T >::normalize(), numeric::xyzVector< T >::normalize_any(), numeric::xyzVector< T >::normalize_or_zero(), numeric::xyzVector< T >::normalized(), numeric::xyzVector< T >::normalized_any(), numeric::xyzVector< T >::normalized_or_zero(), enumerate_junctions.Design::output_string(), enumerate_junctions.Design::output_valid(), KinFunGroupTK::place_c(), enumerate_junctions.DHR::print(), enumerate_junctions.Junction::print(), rand_rot(), recenter_with_missing(), setup_symmetric_dimer(), enumerate_junctions.Junction::to_component(), enumerate_junctions.DHR::write_to_file(), and enumerate_junctions.Junction::write_to_file().

length_squared()

template<typename T >

Value numeric::xyzVector< T >::length_squared ( ) const

inline

Length squared.

References numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

Referenced by CustomMover::apply(), numeric::xyzVector< T >::equal_length(), generate_from_fiber(), get_lj_atom_score(), numeric::xyzVector< T >::is_normalized(), numeric::xyzVector< T >::is_unit(), numeric::xyzVector< T >::longer(), numeric::xyzVector< T >::longer_or_equal(), main(), numeric::xyzVector< T >::not_equal_length(), search_translations(), numeric::xyzVector< T >::shorter(), and numeric::xyzVector< T >::shorter_or_equal().

longer()

template<typename T >

bool numeric::xyzVector< T >::longer ( xyzVector< T > const &  v )

inline

Longer?

References numeric::xyzVector< T >::length_squared(), and kmeans_adaptive_kernel_density_bb_dependent_rotlib::v.

longer_or_equal()

template<typename T >

bool numeric::xyzVector< T >::longer_or_equal ( xyzVector< T > const &  v )

inline

Longer or equal length?

References numeric::xyzVector< T >::length_squared(), and kmeans_adaptive_kernel_density_bb_dependent_rotlib::v.

magnitude()

template<typename T >

Value numeric::xyzVector< T >::magnitude ( ) const

inline

Magnitude.

References numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

magnitude_squared()

template<typename T >

Value numeric::xyzVector< T >::magnitude_squared ( ) const

inline

Magnitude squared.

References numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

max()

template<typename T >

xyzVector& numeric::xyzVector< T >::max ( xyzVector< T > const &  v )

inline

Set maximum coordinates wrt another xyzVector.

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::v, numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

Referenced by MatchSet::init_clash_check(), ClashCheck::init_clash_check(), main(), and run_sf4h().

maximum_value()

template<typename T >

T numeric::xyzVector< T >::maximum_value ( ) const

inline

get the highest of the three values in the vector

References max(), numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

Referenced by numeric::rgb_to_hsv().

min()

template<typename T >

xyzVector& numeric::xyzVector< T >::min ( xyzVector< T > const &  v )

inline

Set minimum coordinates wrt another xyzVector.

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::v, numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

Referenced by MatchSet::init_clash_check(), and ClashCheck::init_clash_check().

minimum_value()

template<typename T >

T numeric::xyzVector< T >::minimum_value ( ) const

inline

get the lowest of the three values in the vector

References min(), numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

Referenced by numeric::rgb_to_hsv().

negate()

template<typename T >

xyzVector& numeric::xyzVector< T >::negate ( )

inline

Negate.

References numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

negated() [1/2]

template<typename T >

xyzVector numeric::xyzVector< T >::negated ( ) const

inline

Negated copy.

References numeric::xyzVector< T >::x_, numeric::xyzVector< T >::xyzVector, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

negated() [2/2]

template<typename T >

void numeric::xyzVector< T >::negated ( xyzVector< T > &  a ) const

inline

Negated: Return via argument (slightly faster)

References a, numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

norm()

template<typename T >

Value numeric::xyzVector< T >::norm ( ) const

inline

Norm.

References numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

Referenced by calculate_hASA_by_type_and_attractiveE().

norm_squared()

template<typename T >

Value numeric::xyzVector< T >::norm_squared ( ) const

inline

Norm squared.

References numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

normalize() [1/2]

template<typename T >

xyzVector& numeric::xyzVector< T >::normalize ( )

inline

Normalize.

References CREATE_EXCEPTION, numeric::xyzVector< T >::length(), numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

Referenced by alignaxis(), numeric::alignVectorSets(), numeric::AxisRotationSampler::AxisRotationSampler(), calculate_theoretical_RNA_length_with_bond_angle_dependence(), apps::pilot::HelixMover::get_helix_center(), get_reflection_axis(), helix_axis(), numeric::HomogeneousTransform< T >::HomogeneousTransform(), InterfaceStrandFinderMover::is_strand_exposed(), main(), numeric::geometry::make_plane_from_three_points(), and slice_ellipsoid_envelope().

normalize() [2/2]

template<typename T >

xyzVector& numeric::xyzVector< T >::normalize ( Value const &  length_a )

inline

Normalize to a length.

References numeric::xyzVector< T >::length(), numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

normalize_any() [1/2]

template<typename T >

xyzVector& numeric::xyzVector< T >::normalize_any ( )

inline

Normalize: arbitrary normalized xyzVector if length is zero.

References numeric::xyzVector< T >::length(), numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

normalize_any() [2/2]

template<typename T >

xyzVector& numeric::xyzVector< T >::normalize_any ( Value const &  length_a )

inline

Normalize to a length: arbitrary normalized xyzVector if length is zero.

References numeric::xyzVector< T >::length(), numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

normalize_or_zero() [1/2]

template<typename T >

xyzVector& numeric::xyzVector< T >::normalize_or_zero ( )

inline

Normalize: zero xyzVector if length is zero.

References numeric::xyzVector< T >::length(), numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

normalize_or_zero() [2/2]

template<typename T >

xyzVector& numeric::xyzVector< T >::normalize_or_zero ( Value const &  length_a )

inline

Normalize to a length: zero xyzVector if length is zero.

References numeric::xyzVector< T >::length(), numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

normalized() [1/4]

template<typename T >

xyzVector numeric::xyzVector< T >::normalized ( ) const

inline

Normalized copy.

References numeric::xyzVector< T >::length(), numeric::xyzVector< T >::x_, numeric::xyzVector< T >::xyzVector, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

normalized() [2/4]

template<typename T >

xyzVector numeric::xyzVector< T >::normalized ( Value const &  length_a ) const

inline

Normalized to a length copy.

References numeric::xyzVector< T >::length(), numeric::xyzVector< T >::x_, numeric::xyzVector< T >::xyzVector, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

normalized() [3/4]

template<typename T >

void numeric::xyzVector< T >::normalized ( Value const &  length_a, xyzVector< T > &  a  ) const

inline

Normalized to a length.

References a, numeric::xyzVector< T >::length(), numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

normalized() [4/4]

template<typename T >

void numeric::xyzVector< T >::normalized ( xyzVector< T > &  a ) const

inline

Normalized.

References a, CREATE_EXCEPTION, numeric::xyzVector< T >::length(), numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

Referenced by Tet4HMatchAligner::align_info(), Tet4HMatchAligner::align_rot(), alignaxis(), numeric::ccd_angle(), change_floating_sc_geometry(), dock(), doit(), dostuff(), generate_from_fiber(), get_lj_atom_score(), get_zn_axes(), ik_arg_asp_frnt(), ik_arg_asp_side(), ik_arg_glu_frnt(), ik_arg_glu_side(), ik_his_clamp(), intersecting_bpy_axes(), intersecting_disulfide_axes(), isctfast(), main(), KinFunGroupTK::place_c(), KinRotSel::place_n(), zinc_stats::ZincStatisticGenerator::recursively_model_rotamer_chis(), run(), run_m8(), run_sf4h(), run_tyr_his(), run_zn2his(), sicfast(), HubDenovo::stupid_ddg(), TCDock::swap_axis(), TCDock::TCDock(), and test_chi_xform().

normalized_any() [1/4]

template<typename T >

xyzVector numeric::xyzVector< T >::normalized_any ( ) const

inline

Normalized copy: Arbitrary normalized xyzVector if length is zero.

References numeric::xyzVector< T >::length(), numeric::xyzVector< T >::x_, numeric::xyzVector< T >::xyzVector, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

normalized_any() [2/4]

template<typename T >

xyzVector numeric::xyzVector< T >::normalized_any ( Value const &  length_a ) const

inline

Normalized to a length copy: Arbitrary normalized xyzVector if length is zero.

References numeric::xyzVector< T >::length(), numeric::xyzVector< T >::x_, numeric::xyzVector< T >::xyzVector, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

normalized_any() [3/4]

template<typename T >

void numeric::xyzVector< T >::normalized_any ( Value const &  length_a, xyzVector< T > &  a  ) const

inline

Normalized to a length: arbitrary normalized xyzVector if length is zero.

References a, numeric::xyzVector< T >::length(), numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

normalized_any() [4/4]

template<typename T >

void numeric::xyzVector< T >::normalized_any ( xyzVector< T > &  a ) const

inline

Normalized: arbitrary normalized xyzVector if length is zero.

References a, numeric::xyzVector< T >::length(), numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

normalized_or_zero() [1/4]

template<typename T >

xyzVector numeric::xyzVector< T >::normalized_or_zero ( ) const

inline

Normalized copy: Zero xyzVector if length is zero.

References numeric::xyzVector< T >::length(), numeric::xyzVector< T >::x_, numeric::xyzVector< T >::xyzVector, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

normalized_or_zero() [2/4]

template<typename T >

xyzVector numeric::xyzVector< T >::normalized_or_zero ( Value const &  length_a ) const

inline

Normalized to a length copy: Zero xyzVector if length is zero.

References numeric::xyzVector< T >::length(), numeric::xyzVector< T >::x_, numeric::xyzVector< T >::xyzVector, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

normalized_or_zero() [3/4]

template<typename T >

void numeric::xyzVector< T >::normalized_or_zero ( Value const &  length_a, xyzVector< T > &  a  ) const

inline

Normalized to a length: zero xyzVector if length is zero.

References a, numeric::xyzVector< T >::length(), numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

normalized_or_zero() [4/4]

template<typename T >

void numeric::xyzVector< T >::normalized_or_zero ( xyzVector< T > &  a ) const

inline

Normalized: zero xyzVector if length is zero.

References a, numeric::xyzVector< T >::length(), numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

Referenced by numeric::random::random_normal().

not_equal_length() [1/2]

template<typename T >

bool numeric::xyzVector< T >::not_equal_length ( xyzVector< T > const &  v )

inline

Not equal length?

References numeric::xyzVector< T >::length_squared(), and kmeans_adaptive_kernel_density_bb_dependent_rotlib::v.

not_equal_length() [2/2]

template<typename T >

template<typename U >

bool numeric::xyzVector< T >::not_equal_length	(	xyzVector< U > const &	a,
		xyzVector< U > const &	b
	)

Not equal length?

operator()() [1/2]

template<typename T >

Value& numeric::xyzVector< T >::operator() ( int const  i )

inline

xyzVector( i ): 1-based index

References create_a3b_hbs::i, numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

operator()() [2/2]

template<typename T >

Value const& numeric::xyzVector< T >::operator() ( int const  i ) const

inline

xyzVector( i ) const: 1-based index

References create_a3b_hbs::i, numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

operator*=()

template<typename T >

xyzVector& numeric::xyzVector< T >::operator*= ( Value const &  t )

inline

*= Value

References predPRE::t, numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

operator+=() [1/2]

template<typename T >

xyzVector& numeric::xyzVector< T >::operator+= ( Value const &  t )

inline

+= Value

References predPRE::t, numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

operator+=() [2/2]

template<typename T >

template<typename U >

xyzVector& numeric::xyzVector< T >::operator+= ( xyzVector< U > const &  v )

inline

+= xyzVector

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::v, numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

operator-()

template<typename T >

xyzVector numeric::xyzVector< T >::operator- ( ) const

inline

-xyzVector (negated copy)

References numeric::xyzVector< T >::x_, numeric::xyzVector< T >::xyzVector, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

operator-=() [1/2]

template<typename T >

xyzVector& numeric::xyzVector< T >::operator-= ( Value const &  t )

inline

-= Value

References predPRE::t, numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

operator-=() [2/2]

template<typename T >

template<typename U >

xyzVector& numeric::xyzVector< T >::operator-= ( xyzVector< U > const &  v )

inline

-= xyzVector

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::v, numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

operator/=()

template<typename T >

xyzVector& numeric::xyzVector< T >::operator/= ( Value const &  t )

inline

/= Value

References predPRE::t, numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

operator=() [1/4]

template<typename T >

template<typename U >

xyzVector& numeric::xyzVector< T >::operator= ( U const *  p )

inline

Assignment from pointer to contiguous values.

Warning

No way to check that argument points to three values

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::p, numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

operator=() [2/4]

template<typename T >

xyzVector& numeric::xyzVector< T >::operator= ( Value const &  t )

inline

= Value

References predPRE::t, numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

operator=() [3/4]

template<typename T >

xyzVector& numeric::xyzVector< T >::operator= ( xyzVector< T > const &  v )

inline

Copy assignment.

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::v, numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

operator=() [4/4]

template<typename T >

template<typename U >

xyzVector& numeric::xyzVector< T >::operator= ( xyzVector< U > const &  v )

inline

Copy assignment.

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::v, numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

operator[]() [1/2]

template<typename T >

Value& numeric::xyzVector< T >::operator[] ( int const  i )

inline

xyzVector[ i ]: 0-based index

References create_a3b_hbs::i, numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

operator[]() [2/2]

template<typename T >

Value const& numeric::xyzVector< T >::operator[] ( int const  i ) const

inline

xyzVector[ i ] const: 0-based index

References create_a3b_hbs::i, numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

project_normal()

template<typename T >

xyzVector& numeric::xyzVector< T >::project_normal ( xyzVector< T > const &  v )

inline

Project normal.

Note

This vector projected normally onto input vector

Not meaningful when v == 0

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::c, numeric::xyzVector< T >::dot(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::v, numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

project_parallel()

template<typename T >

xyzVector& numeric::xyzVector< T >::project_parallel ( xyzVector< T > const &  v )

inline

Project parallel.

Note

This vector projected in direction of input vector

Not meaningful when v == 0

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::c, numeric::xyzVector< T >::dot(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::v, numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

projected_normal() [1/2]

template<typename T >

xyzVector numeric::xyzVector< T >::projected_normal ( xyzVector< T > const &  v ) const

inline

Projected normal copy.

Note

Copy of this vector projected normally onto input vector

Not meaningful when v == 0

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::c, numeric::xyzVector< T >::dot(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::v, numeric::xyzVector< T >::x_, numeric::xyzVector< T >::xyzVector, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

projected_normal() [2/2]

template<typename T >

void numeric::xyzVector< T >::projected_normal ( xyzVector< T > const &  v, xyzVector< T > &  a  ) const

inline

Projected normal.

Note

Copy of this vector projected normally onto first input vector

Not meaningful when v == 0

References a, kmeans_adaptive_kernel_density_bb_dependent_rotlib::c, numeric::xyzVector< T >::dot(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::v, numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

projected_parallel() [1/2]

template<typename T >

xyzVector numeric::xyzVector< T >::projected_parallel ( xyzVector< T > const &  v ) const

inline

Projected parallel copy.

Note

Copy of this vector projected in direction of input vector

Not meaningful when v == 0

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::c, numeric::xyzVector< T >::dot(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::v, and numeric::xyzVector< T >::xyzVector.

Referenced by zinc_stats::ZincStatisticGenerator::recursively_model_rotamer_chis().

projected_parallel() [2/2]

template<typename T >

void numeric::xyzVector< T >::projected_parallel ( xyzVector< T > const &  v, xyzVector< T > &  a  )

inline

Projected parallel.

Note

Copy of this vector projected in direction of first input vector

Not meaningful when v == 0

References a, kmeans_adaptive_kernel_density_bb_dependent_rotlib::c, numeric::xyzVector< T >::dot(), and kmeans_adaptive_kernel_density_bb_dependent_rotlib::v.

scaled_add()

template<typename T >

template<typename U >

xyzVector& numeric::xyzVector< T >::scaled_add ( Value const &  t, xyzVector< U > const &  v  )

inline

Add Value * xyzVector.

Note

Avoids temporary of += Value * xyzVector

References predPRE::t, kmeans_adaptive_kernel_density_bb_dependent_rotlib::v, numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

scaled_assign()

template<typename T >

template<typename U >

xyzVector& numeric::xyzVector< T >::scaled_assign ( Value const &  t, xyzVector< U > const &  v  )

inline

Assign Value * xyzVector.

Note

Avoids temporary of = Value * xyzVector

References predPRE::t, kmeans_adaptive_kernel_density_bb_dependent_rotlib::v, numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

scaled_sub()

template<typename T >

template<typename U >

xyzVector& numeric::xyzVector< T >::scaled_sub ( Value const &  t, xyzVector< U > const &  v  )

inline

Subtract Value * xyzVector.

Note

Avoids temporary of -= Value * xyzVector

References predPRE::t, kmeans_adaptive_kernel_density_bb_dependent_rotlib::v, numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

shorter()

template<typename T >

bool numeric::xyzVector< T >::shorter ( xyzVector< T > const &  v )

inline

Shorter?

References numeric::xyzVector< T >::length_squared(), and kmeans_adaptive_kernel_density_bb_dependent_rotlib::v.

shorter_or_equal()

template<typename T >

bool numeric::xyzVector< T >::shorter_or_equal ( xyzVector< T > const &  v )

inline

Shorter or equal length?

References numeric::xyzVector< T >::length_squared(), and kmeans_adaptive_kernel_density_bb_dependent_rotlib::v.

square()

template<typename T >

static Value numeric::xyzVector< T >::square ( Value const &  t )

inlinestaticprivate

square( t ) == t * t

References predPRE::t.

Referenced by numeric::xyzVector< T >::distance(), and numeric::xyzVector< T >::distance_squared().

to_string()

template<typename T >

std::string numeric::xyzVector< T >::to_string ( ) const

inline

to_string, useful for utility exits

References numeric::interpolation::to_string(), numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

Referenced by MPFoldingMover::apply(), and check_options().

x() [1/3]

template<typename T >

Value& numeric::xyzVector< T >::x ( )

inline

Value x.

References numeric::xyzVector< T >::x_.

Referenced by PyMOL-Rosetta-relay-client.XYZCoord::__init__(), PyMOL-RosettaServer.XYZCoord::__init__(), PyMOL-Rosetta-relay-client.XYZCoord::__str__(), PyMOL-RosettaServer.XYZCoord::__str__(), and pyrosetta.PyMOLRosettaServer.XYZCoord::__str__().

x() [2/3]

template<typename T >

Value const& numeric::xyzVector< T >::x ( ) const

inline

Value x const.

References numeric::xyzVector< T >::x_.

Referenced by PyMOL-Rosetta-relay-client.XYZCoord::__init__(), PyMOL-RosettaServer.XYZCoord::__init__(), PyMOL-Rosetta-relay-client.XYZCoord::__str__(), PyMOL-RosettaServer.XYZCoord::__str__(), pyrosetta.PyMOLRosettaServer.XYZCoord::__str__(), MyRotMover::apply(), HBondReporter::apply(), numeric::geometry::hashing::SixDCoordinateBinner::bin6(), ClashCheck::clash_check(), MatchSet::clash_check(), numeric::geometry::hashing::xyzStripeHash::clash_check_ball(), MatchSet::cross(), MatchSet::cross_homodimer(), numeric::deserialize(), dump_hbonds(), MatchAlignInfo::dump_pdb(), dumpsym(), fit_helix_in_map(), MyRT::from_axis(), numeric::xyzTransform< T >::from_euler_angles_rad(), get_change_in_distance(), get_cys_rts(), ClosabilityScore::get_rt_over_leap(), numeric::VoxelGrid< T >::GetSqDistanceOutsideBoundingBox(), apps::pilot::momeara::HBondConformation::hbond_param_sweep(), numeric::HomogeneousTransform< T >::HomogeneousTransform(), numeric::hsv_to_rgb(), numeric::geometry::hashing::xyzStripeHash::init(), MatchSet::init_clash_check(), ClashCheck::init_clash_check(), isctfast(), local_rms(), local_rms_window(), main(), DisulfEpos::make_farray(), mg_pdbstats_from_pose(), numeric::HomogeneousTransform< T >::operator*(), numeric::operator<<(), zinc_stats::ZincStatisticGenerator::output_file(), KinFunGroupTK::place_c(), KinRotSel::place_n(), numeric::principal_components_and_eigenvalues(), print_pep_csts(), rb_entropy_test(), read_embeddings(), read_membrane(), real6_from_rt(), ui::ui_protocols::helical_bundle::HelicalBundlePoseDrawOpenGLWidget::reset_nonparametric_translation_vect(), numeric::rgb_to_hsv(), run(), run_diiron_glu(), run_m8(), run_pep_prep(), run_tyr_his(), run_zn2his(), numeric::serialize(), set_pep_cst(), set_pep_csts(), numeric::VoxelGrid< T >::SetupGrid(), MembraneRelaxMover::show_membrane_position(), sicfast(), slice_ellipsoid_envelope(), slow_nbcount(), IsctFast::test(), numeric::geometry::hashing::xyzStripeHash::translation_real(), numeric::random::uniform_vector_sphere(), update_atom_positions(), user_overwrites_options(), numeric::geometry::vector_normal_to_ring_plane_of_best_fit(), PBPotentialMover::write_APBS_config(), and numeric::crick_equations::XYZ_BUNDLE().

x() [3/3]

template<typename T >

void numeric::xyzVector< T >::x ( Value const &  x_a )

inline

x assignment

References numeric::xyzVector< T >::x_.

Referenced by PyMOL-Rosetta-relay-client.XYZCoord::__init__(), PyMOL-RosettaServer.XYZCoord::__init__(), PyMOL-Rosetta-relay-client.XYZCoord::__str__(), PyMOL-RosettaServer.XYZCoord::__str__(), and pyrosetta.PyMOLRosettaServer.XYZCoord::__str__().

y() [1/3]

template<typename T >

Value& numeric::xyzVector< T >::y ( )

inline

Value y.

References numeric::xyzVector< T >::y_.

Referenced by PyMOL-Rosetta-relay-client.XYZCoord::__init__(), PyMOL-RosettaServer.XYZCoord::__init__(), PyMOL-Rosetta-relay-client.XYZCoord::__str__(), PyMOL-RosettaServer.XYZCoord::__str__(), and pyrosetta.PyMOLRosettaServer.XYZCoord::__str__().

y() [2/3]

template<typename T >

Value const& numeric::xyzVector< T >::y ( ) const

inline

Value y const.

References numeric::xyzVector< T >::y_.

Referenced by PyMOL-Rosetta-relay-client.XYZCoord::__init__(), PyMOL-RosettaServer.XYZCoord::__init__(), PyMOL-Rosetta-relay-client.XYZCoord::__str__(), PyMOL-RosettaServer.XYZCoord::__str__(), pyrosetta.PyMOLRosettaServer.XYZCoord::__str__(), MyRotMover::apply(), HBondReporter::apply(), numeric::geometry::hashing::SixDCoordinateBinner::bin6(), ClashCheck::clash_check(), MatchSet::clash_check(), numeric::geometry::hashing::xyzStripeHash::clash_check_ball(), MatchSet::cross(), MatchSet::cross_homodimer(), numeric::deserialize(), dump_hbonds(), MatchAlignInfo::dump_pdb(), dumpsym(), fit_helix_in_map(), MyRT::from_axis(), numeric::xyzTransform< T >::from_euler_angles_rad(), get_change_in_distance(), get_cys_rts(), ClosabilityScore::get_rt_over_leap(), numeric::VoxelGrid< T >::GetSqDistanceOutsideBoundingBox(), apps::pilot::momeara::HBondConformation::hbond_param_sweep(), numeric::HomogeneousTransform< T >::HomogeneousTransform(), numeric::hsv_to_rgb(), numeric::geometry::hashing::xyzStripeHash::init(), MatchSet::init_clash_check(), ClashCheck::init_clash_check(), isctfast(), local_rms(), local_rms_window(), main(), DisulfEpos::make_farray(), mg_pdbstats_from_pose(), numeric::HomogeneousTransform< T >::operator*(), numeric::operator<<(), zinc_stats::ZincStatisticGenerator::output_file(), KinFunGroupTK::place_c(), KinRotSel::place_n(), numeric::principal_components_and_eigenvalues(), print_pep_csts(), rb_entropy_test(), read_embeddings(), read_membrane(), real6_from_rt(), ui::ui_protocols::helical_bundle::HelicalBundlePoseDrawOpenGLWidget::reset_nonparametric_translation_vect(), numeric::rgb_to_hsv(), run(), run_diiron_glu(), run_m8(), run_pep_prep(), run_tyr_his(), run_zn2his(), numeric::serialize(), set_pep_cst(), set_pep_csts(), numeric::VoxelGrid< T >::SetupGrid(), MembraneRelaxMover::show_membrane_position(), sicfast(), slice_ellipsoid_envelope(), slow_nbcount(), IsctFast::test(), numeric::geometry::hashing::xyzStripeHash::translation_real(), numeric::random::uniform_vector_sphere(), user_overwrites_options(), numeric::geometry::vector_normal_to_ring_plane_of_best_fit(), PBPotentialMover::write_APBS_config(), and numeric::crick_equations::XYZ_BUNDLE().

y() [3/3]

template<typename T >

void numeric::xyzVector< T >::y ( Value const &  y_a )

inline

y assignment

References numeric::xyzVector< T >::y_.

Referenced by PyMOL-Rosetta-relay-client.XYZCoord::__init__(), PyMOL-RosettaServer.XYZCoord::__init__(), PyMOL-Rosetta-relay-client.XYZCoord::__str__(), PyMOL-RosettaServer.XYZCoord::__str__(), and pyrosetta.PyMOLRosettaServer.XYZCoord::__str__().

z() [1/3]

template<typename T >

Value& numeric::xyzVector< T >::z ( )

inline

Value z.

References numeric::xyzVector< T >::z_.

Referenced by PyMOL-Rosetta-relay-client.XYZCoord::__init__(), PyMOL-RosettaServer.XYZCoord::__init__(), PyMOL-Rosetta-relay-client.XYZCoord::__str__(), PyMOL-RosettaServer.XYZCoord::__str__(), and pyrosetta.PyMOLRosettaServer.XYZCoord::__str__().

z() [2/3]

template<typename T >

Value const& numeric::xyzVector< T >::z ( ) const

inline

Value z const.

References numeric::xyzVector< T >::z_.

Referenced by PyMOL-Rosetta-relay-client.XYZCoord::__init__(), PyMOL-RosettaServer.XYZCoord::__init__(), PyMOL-Rosetta-relay-client.XYZCoord::__str__(), PyMOL-RosettaServer.XYZCoord::__str__(), pyrosetta.PyMOLRosettaServer.XYZCoord::__str__(), align_sf4(), align_zns(), MyRotMover::apply(), HBondReporter::apply(), numeric::geometry::hashing::SixDCoordinateBinner::bin6(), calc_c3_rmsd(), ClashCheck::clash_check(), MatchSet::clash_check(), numeric::geometry::hashing::xyzStripeHash::clash_check_ball(), MatchSet::cross(), MatchSet::cross_homodimer(), numeric::deserialize(), dock(), dump_hbonds(), MatchAlignInfo::dump_pdb(), dumpsym(), fit_helix_in_map(), MyRT::from_axis(), numeric::xyzTransform< T >::from_euler_angles_rad(), get_change_in_distance(), get_cys_rts(), get_repl_xyz(), ClosabilityScore::get_rt_over_leap(), numeric::VoxelGrid< T >::GetSqDistanceOutsideBoundingBox(), apps::pilot::momeara::HBondConformation::hbond_param_sweep(), numeric::HomogeneousTransform< T >::HomogeneousTransform(), numeric::hsv_to_rgb(), numeric::geometry::hashing::xyzStripeHash::init(), MatchSet::init_clash_check(), ClashCheck::init_clash_check(), isctfast(), local_rms(), local_rms_window(), main(), DisulfEpos::make_farray(), mg_pdbstats_from_pose(), numeric::HomogeneousTransform< T >::operator*(), numeric::operator<<(), zinc_stats::ZincStatisticGenerator::output_file(), KinFunGroupTK::place_c(), KinRotSel::place_n(), numeric::principal_components_and_eigenvalues(), print_pep_csts(), rb_entropy_test(), read_embeddings(), read_membrane(), real6_from_rt(), ui::ui_protocols::helical_bundle::HelicalBundlePoseDrawOpenGLWidget::reset_nonparametric_translation_vect(), numeric::rgb_to_hsv(), run(), run_diiron_glu(), run_m8(), run_pep_prep(), run_tyr_his(), run_zn2his(), numeric::serialize(), set_pep_cst(), set_pep_csts(), numeric::VoxelGrid< T >::SetupGrid(), MembraneRelaxMover::show_membrane_position(), sicfast(), slice_ellipsoid_envelope(), slow_nbcount(), IsctFast::test(), numeric::geometry::hashing::xyzStripeHash::translation_real(), numeric::random::uniform_vector_sphere(), user_overwrites_options(), numeric::geometry::vector_normal_to_ring_plane_of_best_fit(), PBPotentialMover::write_APBS_config(), and numeric::crick_equations::XYZ_BUNDLE().

z() [3/3]

template<typename T >

void numeric::xyzVector< T >::z ( Value const &  z_a )

inline

z assignment

References numeric::xyzVector< T >::z_.

Referenced by PyMOL-Rosetta-relay-client.XYZCoord::__init__(), PyMOL-RosettaServer.XYZCoord::__init__(), PyMOL-Rosetta-relay-client.XYZCoord::__str__(), PyMOL-RosettaServer.XYZCoord::__str__(), and pyrosetta.PyMOLRosettaServer.XYZCoord::__str__().

zero()

template<typename T >

xyzVector& numeric::xyzVector< T >::zero ( )

inline

Zero.

References numeric::xyzVector< T >::x_, numeric::xyzVector< T >::y_, and numeric::xyzVector< T >::z_.

Referenced by avg_ca_position(), and main().

Friends And Related Function Documentation

add [1/3]

template<typename T >

template<typename U >

void add ( U const &  t, xyzVector< U > const &  v, xyzVector< U > &  r  )

friend

Add: Value + xyzVector.

Referenced by job_manager.MoveStatsWindow::__init__(), and pyrosetta.bindings.pose.ResidueLabelAccessor::discard().

add [2/3]

template<typename T >

template<typename U >

void add ( xyzVector< U > const &  a, xyzVector< U > const &  b, xyzVector< U > &  r  )

friend

Add: xyzVector + xyzVector.

Referenced by job_manager.MoveStatsWindow::__init__(), and pyrosetta.bindings.pose.ResidueLabelAccessor::discard().

add [3/3]

template<typename T >

template<typename U >

void add ( xyzVector< U > const &  v, U const &  t, xyzVector< U > &  r  )

friend

Add: xyzVector + Value.

Referenced by job_manager.MoveStatsWindow::__init__(), and pyrosetta.bindings.pose.ResidueLabelAccessor::discard().

center [1/6]

template<typename T >

template<typename U >

xyzVector<U> center ( xyzVector< U > const &  a, xyzVector< U > const &  b  )

friend

Center of 2 xyzVectors.

Referenced by MPFoldingMover::apply().

center [2/6]

template<typename T >

template<typename U >

void center ( xyzVector< U > const &  a, xyzVector< U > const &  b, xyzVector< U > &  m  )

friend

Center of 2 xyzVectors: Return via argument (slightly faster)

center [3/6]

template<typename T >

template<typename U >

xyzVector<U> center ( xyzVector< U > const &  a, xyzVector< U > const &  b, xyzVector< U > const &  c  )

friend

Center of 3 xyzVectors.

center [4/6]

template<typename T >

template<typename U >

void center ( xyzVector< U > const &  a, xyzVector< U > const &  b, xyzVector< U > const &  c, xyzVector< U > &  m  )

friend

Center of 3 xyzVectors: Return via argument (slightly faster)

center [5/6]

template<typename T >

template<typename U >

xyzVector<U> center ( xyzVector< U > const &  a, xyzVector< U > const &  b, xyzVector< U > const &  c, xyzVector< U > const &  d  )

friend

Center of 4 xyzVectors.

center [6/6]

template<typename T >

template<typename U >

void center ( xyzVector< U > const &  a, xyzVector< U > const &  b, xyzVector< U > const &  c, xyzVector< U > const &  d, xyzVector< U > &  m  )

friend

Center of 4 xyzVectors: Return via argument (slightly faster)

cross [1/2]

template<typename T >

template<typename U >

xyzVector<U> cross ( xyzVector< U > const &  a, xyzVector< U > const &  b  )

friend

Cross product.

cross [2/2]

template<typename T >

template<typename U >

void cross ( xyzVector< U > const &  a, xyzVector< U > const &  b, xyzVector< U > &  c  )

friend

Cross product: Return via argument (slightly faster)

cross_product [1/2]

template<typename T >

template<typename U >

xyzVector<U> cross_product ( xyzVector< U > const &  a, xyzVector< U > const &  b  )

friend

Cross product.

cross_product [2/2]

template<typename T >

template<typename U >

void cross_product ( xyzVector< U > const &  a, xyzVector< U > const &  b, xyzVector< U > &  c  )

friend

Cross product: Return via argument (slightly faster)

divide

template<typename T >

template<typename U >

void divide ( xyzVector< U > const &  v, U const &  t, xyzVector< U > &  r  )

friend

Divide: xyzVector / Value.

dot

template<typename T >

template<typename U >

U dot ( xyzVector< U > const &  a, xyzVector< U > const &  b  )

friend

Dot product.

dot_product

template<typename T >

template<typename U >

U dot_product ( xyzVector< U > const &  a, xyzVector< U > const &  b  )

friend

Dot product.

equal_length

template<typename T >

template<typename U >

bool equal_length ( xyzVector< U > const &  a, xyzVector< U > const &  b  )

friend

Equal length?

inner_product

template<typename T >

template<typename U >

U inner_product ( xyzVector< U > const &  a, xyzVector< U > const &  b  )

friend

Inner product ( == dot product )

inplace_product

template<typename T >

xyzVector< T >& inplace_product ( xyzMatrix< T > const &  m, xyzVector< T > &  v  )

friend

xyzMatrix * xyzVector in-place product

Note

Input xyzVector is modified

inplace_transpose_product

template<typename T >

xyzVector< T >& inplace_transpose_product ( xyzMatrix< T > const &  m, xyzVector< T > &  v  )

friend

xyzMatrix^T * xyzVector in-place transpose product

Note

Input xyzVector is modified

max

template<typename T >

template<typename U >

xyzVector<U> max ( xyzVector< U > const &  a, xyzVector< U > const &  b  )

friend

xyzVector with max coordinates of two xyzVectors

midpoint [1/2]

template<typename T >

template<typename U >

xyzVector<U> midpoint ( xyzVector< U > const &  a, xyzVector< U > const &  b  )

friend

Midpoint of 2 xyzVectors.

midpoint [2/2]

template<typename T >

template<typename U >

void midpoint ( xyzVector< U > const &  a, xyzVector< U > const &  b, xyzVector< U > &  m  )

friend

Midpoint of 2 xyzVectors: Return via argument (slightly faster)

min

template<typename T >

template<typename U >

xyzVector<U> min ( xyzVector< U > const &  a, xyzVector< U > const &  b  )

friend

xyzVector with min coordinates of two xyzVectors

multiply [1/2]

template<typename T >

template<typename U >

void multiply ( U const &  t, xyzVector< U > const &  v, xyzVector< U > &  r  )

friend

Multiply: Value * xyzVector.

multiply [2/2]

template<typename T >

template<typename U >

void multiply ( xyzVector< U > const &  v, U const &  t, xyzVector< U > &  r  )

friend

Multiply: xyzVector * Value.

operator!= [1/3]

template<typename T >

bool operator!= ( Value const &  t, xyzVector< T > const &  v  )

friend

Value != xyzVector.

operator!= [2/3]

template<typename T >

bool operator!= ( xyzVector< T > const &  a, xyzVector< T > const &  b  )

friend

xyzVector != xyzVector

operator!= [3/3]

template<typename T >

bool operator!= ( xyzVector< T > const &  v, Value const &  t  )

friend

xyzVector != Value

operator* [1/3]

template<typename T >

xyzVector operator* ( Value const &  t, xyzVector< T > const &  v  )

friend

Value * xyzVector.

operator* [2/3]

template<typename T >

xyzVector< T > operator* ( xyzMatrix< T > const &  m, xyzVector< T > const &  v  )

friend

operator* [3/3]

template<typename T >

xyzVector operator* ( xyzVector< T > const &  v, Value const &  t  )

friend

xyzVector * Value

operator+ [1/3]

template<typename T >

xyzVector operator+ ( Value const &  t, xyzVector< T > const &  v  )

friend

Value + xyzVector.

operator+ [2/3]

template<typename T >

xyzVector operator+ ( xyzVector< T > const &  a, xyzVector< T > const &  b  )

friend

xyzVector + xyzVector

operator+ [3/3]

template<typename T >

xyzVector operator+ ( xyzVector< T > const &  v, Value const &  t  )

friend

xyzVector + Value

operator- [1/3]

template<typename T >

xyzVector operator- ( Value const &  t, xyzVector< T > const &  v  )

friend

Value - xyzVector.

operator- [2/3]

template<typename T >

xyzVector operator- ( xyzVector< T > const &  a, xyzVector< T > const &  b  )

friend

xyzVector - xyzVector

operator- [3/3]

template<typename T >

xyzVector operator- ( xyzVector< T > const &  v, Value const &  t  )

friend

xyzVector - Value

operator/

template<typename T >

xyzVector operator/ ( xyzVector< T > const &  v, Value const &  t  )

friend

xyzVector / Value

operator< [1/3]

template<typename T >

bool operator< ( Value const &  t, xyzVector< T > const &  v  )

friend

Value < xyzVector.

operator< [2/3]

template<typename T >

bool operator< ( xyzVector< T > const &  a, xyzVector< T > const &  b  )

friend

xyzVector < xyzVector

operator< [3/3]

template<typename T >

bool operator< ( xyzVector< T > const &  v, Value const &  t  )

friend

xyzVector < Value

operator<= [1/3]

template<typename T >

bool operator<= ( Value const &  t, xyzVector< T > const &  v  )

friend

Value <= xyzVector.

operator<= [2/3]

template<typename T >

bool operator<= ( xyzVector< T > const &  a, xyzVector< T > const &  b  )

friend

xyzVector <= xyzVector

operator<= [3/3]

template<typename T >

bool operator<= ( xyzVector< T > const &  v, Value const &  t  )

friend

xyzVector <= Value

operator== [1/3]

template<typename T >

bool operator== ( Value const &  t, xyzVector< T > const &  v  )

friend

Value == xyzVector.

operator== [2/3]

template<typename T >

bool operator== ( xyzVector< T > const &  a, xyzVector< T > const &  b  )

friend

xyzVector == xyzVector

operator== [3/3]

template<typename T >

bool operator== ( xyzVector< T > const &  v, Value const &  t  )

friend

xyzVector == Value

operator> [1/3]

template<typename T >

bool operator> ( Value const &  t, xyzVector< T > const &  v  )

friend

Value > xyzVector.

operator> [2/3]

template<typename T >

bool operator> ( xyzVector< T > const &  a, xyzVector< T > const &  b  )

friend

xyzVector > xyzVector

operator> [3/3]

template<typename T >

bool operator> ( xyzVector< T > const &  v, Value const &  t  )

friend

xyzVector > Value

operator>= [1/3]

template<typename T >

bool operator>= ( Value const &  t, xyzVector< T > const &  v  )

friend

Value >= xyzVector.

operator>= [2/3]

template<typename T >

bool operator>= ( xyzVector< T > const &  a, xyzVector< T > const &  b  )

friend

xyzVector >= xyzVector

operator>= [3/3]

template<typename T >

bool operator>= ( xyzVector< T > const &  v, Value const &  t  )

friend

xyzVector >= Value

outer_product

template<typename T >

xyzMatrix< T > outer_product ( xyzVector< T > const &  a, xyzVector< T > const &  b  )

friend

xyzVector xyzVector outer product

product

template<typename T >

xyzVector< T > product ( xyzMatrix< T > const &  m, xyzVector< T > const &  v  )

friend

xyzMatrix * xyzVector product

Note

Same as xyzMatrix * xyzVector

projection_matrix

template<typename T >

xyzMatrix< T > projection_matrix ( xyzVector< T > const &  v )

friend

geometric center

Note

compute the geometric center of a list of points

Projection matrix onto the line through a vector

rotation_matrix

template<typename T >

xyzMatrix< T > rotation_matrix ( xyzVector< T > const &  axis, T const &  theta  )

friend

Rotation matrix for rotation about an axis by an angle in radians.

Referenced by numeric::EulerAngles< T >::EulerAngles().

subtract [1/3]

template<typename T >

template<typename U >

void subtract ( U const &  t, xyzVector< U > const &  v, xyzVector< U > &  r  )

friend

Subtract: Value - xyzVector.

subtract [2/3]

template<typename T >

template<typename U >

void subtract ( xyzVector< U > const &  a, xyzVector< U > const &  b, xyzVector< U > &  r  )

friend

Subtract: xyzVector - xyzVector.

subtract [3/3]

template<typename T >

template<typename U >

void subtract ( xyzVector< U > const &  v, U const &  t, xyzVector< U > &  r  )

friend

Subtract: xyzVector - Value.

transpose_product

template<typename T >

xyzVector< T > transpose_product ( xyzMatrix< T > const &  m, xyzVector< T > const &  v  )

friend

xyzMatrix^T * xyzVector product

update_5way_operation

template<typename T >

template<typename U >

xyzVector<U> update_5way_operation ( xyzVector< U > const &  a, xyzVector< U > const &  b, xyzVector< U > const &  c, xyzVector< U > const &  d, xyzVector< U > const &  e  )

friend

update_operation

template<typename T >

template<typename U >

xyzVector<U> update_operation ( xyzVector< U > const &  a, xyzVector< U > const &  b  )

friend

xyzMatrix

template<typename T >

template<typename >

friend class xyzMatrix

friend

xyzVector

template<typename T >

template<typename >

friend class xyzVector

friend

Referenced by change_docking_pose(), numeric::xyzVector< T >::cross(), numeric::xyzVector< T >::cross_product(), numeric::xyzVector< T >::negated(), numeric::xyzVector< T >::normalized(), numeric::xyzVector< T >::normalized_any(), numeric::xyzVector< T >::normalized_or_zero(), numeric::xyzVector< T >::operator-(), numeric::xyzVector< T >::projected_normal(), and numeric::xyzVector< T >::projected_parallel().

Member Data Documentation

x_

template<typename T >

Value numeric::xyzVector< T >::x_

private

Coordinates of the 3 coordinate vector.

Referenced by numeric::xyzMatrix< T >::add_diagonal(), numeric::xyzVector< T >::assign(), numeric::xyzVector< T >::clear(), numeric::xyzVector< T >::cross(), numeric::xyzVector< T >::cross_product(), numeric::xyzMatrix< T >::diag(), numeric::xyzVector< T >::distance(), numeric::xyzVector< T >::distance_squared(), numeric::xyzVector< T >::dot(), numeric::xyzVector< T >::dot_product(), numeric::xyzVector< T >::inner_product(), numeric::xyzVector< T >::is_finite(), numeric::xyzVector< T >::is_zero(), numeric::xyzVector< T >::length(), numeric::xyzVector< T >::length_squared(), numeric::xyzVector< T >::magnitude(), numeric::xyzVector< T >::magnitude_squared(), numeric::xyzVector< T >::max(), numeric::xyzVector< T >::maximum_value(), numeric::xyzVector< T >::min(), numeric::xyzVector< T >::minimum_value(), numeric::xyzVector< T >::negate(), numeric::xyzVector< T >::negated(), numeric::xyzVector< T >::norm(), numeric::xyzVector< T >::norm_squared(), numeric::xyzVector< T >::normalize(), numeric::xyzVector< T >::normalize_any(), numeric::xyzVector< T >::normalize_or_zero(), numeric::xyzVector< T >::normalized(), numeric::xyzVector< T >::normalized_any(), numeric::xyzVector< T >::normalized_or_zero(), numeric::xyzVector< T >::operator()(), numeric::xyzVector< T >::operator*=(), numeric::xyzVector< T >::operator+=(), numeric::xyzVector< T >::operator-(), numeric::xyzVector< T >::operator-=(), numeric::xyzVector< T >::operator/=(), numeric::xyzVector< T >::operator=(), numeric::xyzVector< T >::operator[](), numeric::xyzVector< T >::project_normal(), numeric::xyzVector< T >::project_parallel(), numeric::xyzVector< T >::projected_normal(), numeric::xyzVector< T >::scaled_add(), numeric::xyzVector< T >::scaled_assign(), numeric::xyzVector< T >::scaled_sub(), numeric::xyzMatrix< T >::set_diagonal(), numeric::xyzMatrix< T >::subtract_diagonal(), numeric::xyzMatrix< T >::to_diag(), numeric::xyzVector< T >::to_string(), numeric::update_5way_operation(), numeric::xyzVector< T >::x(), and numeric::xyzVector< T >::zero().

y_

template<typename T >

Value numeric::xyzVector< T >::y_

private

Referenced by numeric::xyzMatrix< T >::add_diagonal(), numeric::xyzVector< T >::assign(), numeric::xyzVector< T >::clear(), numeric::xyzVector< T >::cross(), numeric::xyzVector< T >::cross_product(), numeric::xyzMatrix< T >::diag(), numeric::xyzVector< T >::distance(), numeric::xyzVector< T >::distance_squared(), numeric::xyzVector< T >::dot(), numeric::xyzVector< T >::dot_product(), numeric::xyzVector< T >::inner_product(), numeric::xyzVector< T >::is_finite(), numeric::xyzVector< T >::is_zero(), numeric::xyzVector< T >::length(), numeric::xyzVector< T >::length_squared(), numeric::xyzVector< T >::magnitude(), numeric::xyzVector< T >::magnitude_squared(), numeric::xyzVector< T >::max(), numeric::xyzVector< T >::maximum_value(), numeric::xyzVector< T >::min(), numeric::xyzVector< T >::minimum_value(), numeric::xyzVector< T >::negate(), numeric::xyzVector< T >::negated(), numeric::xyzVector< T >::norm(), numeric::xyzVector< T >::norm_squared(), numeric::xyzVector< T >::normalize(), numeric::xyzVector< T >::normalize_any(), numeric::xyzVector< T >::normalize_or_zero(), numeric::xyzVector< T >::normalized(), numeric::xyzVector< T >::normalized_any(), numeric::xyzVector< T >::normalized_or_zero(), numeric::xyzVector< T >::operator()(), numeric::xyzVector< T >::operator*=(), numeric::xyzVector< T >::operator+=(), numeric::xyzVector< T >::operator-(), numeric::xyzVector< T >::operator-=(), numeric::xyzVector< T >::operator/=(), numeric::xyzVector< T >::operator=(), numeric::xyzVector< T >::operator[](), numeric::xyzVector< T >::project_normal(), numeric::xyzVector< T >::project_parallel(), numeric::xyzVector< T >::projected_normal(), numeric::xyzVector< T >::scaled_add(), numeric::xyzVector< T >::scaled_assign(), numeric::xyzVector< T >::scaled_sub(), numeric::xyzMatrix< T >::set_diagonal(), numeric::xyzMatrix< T >::subtract_diagonal(), numeric::xyzMatrix< T >::to_diag(), numeric::xyzVector< T >::to_string(), numeric::update_5way_operation(), numeric::xyzVector< T >::y(), and numeric::xyzVector< T >::zero().

z_

template<typename T >

Value numeric::xyzVector< T >::z_

private

Referenced by numeric::xyzMatrix< T >::add_diagonal(), numeric::xyzVector< T >::assign(), numeric::xyzVector< T >::clear(), numeric::xyzVector< T >::cross(), numeric::xyzVector< T >::cross_product(), numeric::xyzMatrix< T >::diag(), numeric::xyzVector< T >::distance(), numeric::xyzVector< T >::distance_squared(), numeric::xyzVector< T >::dot(), numeric::xyzVector< T >::dot_product(), numeric::xyzVector< T >::inner_product(), numeric::xyzVector< T >::is_finite(), numeric::xyzVector< T >::is_zero(), numeric::xyzVector< T >::length(), numeric::xyzVector< T >::length_squared(), numeric::xyzVector< T >::magnitude(), numeric::xyzVector< T >::magnitude_squared(), numeric::xyzVector< T >::max(), numeric::xyzVector< T >::maximum_value(), numeric::xyzVector< T >::min(), numeric::xyzVector< T >::minimum_value(), numeric::xyzVector< T >::negate(), numeric::xyzVector< T >::negated(), numeric::xyzVector< T >::norm(), numeric::xyzVector< T >::norm_squared(), numeric::xyzVector< T >::normalize(), numeric::xyzVector< T >::normalize_any(), numeric::xyzVector< T >::normalize_or_zero(), numeric::xyzVector< T >::normalized(), numeric::xyzVector< T >::normalized_any(), numeric::xyzVector< T >::normalized_or_zero(), numeric::xyzVector< T >::operator()(), numeric::xyzVector< T >::operator*=(), numeric::xyzVector< T >::operator+=(), numeric::xyzVector< T >::operator-(), numeric::xyzVector< T >::operator-=(), numeric::xyzVector< T >::operator/=(), numeric::xyzVector< T >::operator=(), numeric::xyzVector< T >::operator[](), numeric::xyzVector< T >::project_normal(), numeric::xyzVector< T >::project_parallel(), numeric::xyzVector< T >::projected_normal(), numeric::xyzVector< T >::scaled_add(), numeric::xyzVector< T >::scaled_assign(), numeric::xyzVector< T >::scaled_sub(), numeric::xyzMatrix< T >::set_diagonal(), numeric::xyzMatrix< T >::subtract_diagonal(), numeric::xyzMatrix< T >::to_diag(), numeric::xyzVector< T >::to_string(), numeric::update_5way_operation(), numeric::xyzVector< T >::z(), and numeric::xyzVector< T >::zero().

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The documentation for this class was generated from the following files:

• src/numeric/xyzVector.fwd.hh
• src/numeric/xyzVector.hh