fit_helix_in_map.cc File Reference

Fit a helix in a density map at a specific position. More...

#include <core/types.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/scoring/rms_util.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <protocols/viewer/viewers.hh>
#include <core/pose/Pose.hh>
#include <core/pose/rna/util.hh>
#include <core/init/init.hh>
#include <core/import_pose/pose_stream/PoseInputStream.hh>
#include <core/import_pose/pose_stream/PDBPoseInputStream.hh>
#include <core/id/AtomID_Map.hh>
#include <utility/vector1.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/conformation/Residue.hh>
#include <core/pose/util.hh>
#include <core/pose/init_id_map.hh>
#include <protocols/rigid/RigidBodyMover.hh>
#include <iostream>
#include <string>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <utility/excn/Exceptions.hh>
#include <basic/Tracer.hh>
#include <numeric/random/random.hh>

Functions
void	fit_helix_in_map ()
void	align_helix ()
void *	my_main (void *)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.public.DRRAFTER.fit_helix_in_map")

Detailed Description

Fit a helix in a density map at a specific position.

Author

Kalli Kappel

Function Documentation

align_helix()

void align_helix

(

)

References basic::options::OptionKeys::chemical::chemical, create_a3b_hbs::i, basic::options::option, and superimpose_pose().

Referenced by my_main().

fit_helix_in_map()

void fit_helix_in_map

(

)

References basic::options::OptionKeys::chemical::chemical, build_jacobian::distance, utility::options::OptionKeys::options::exit, numeric::random::RandomGenerator::gaussian(), create_a3b_hbs::i, basic::options::OptionKeys::relax::range::kT, oop_conformations::length, numeric::midpoint(), SmotifHasher::min_score, basic::options::option, byres_data::repeat, numeric::random::rg(), create_a3b_hbs::score, subloop_histogram::size, superimpose_pose(), basic::options::TR, pna::trans_mover, numeric::random::RandomGenerator::uniform(), numeric::xyzVector< T >::x(), numeric::xyzVector< T >::y(), and numeric::xyzVector< T >::z().

Referenced by my_main().

main()

int main	(	int	argc,
		char *	argv[]
	)

References utility::options::OptionCollection::add_relevant(), argv, utility::io::oc::cout, test.T009_Exceptions::e, basic::init(), my_main(), NEW_OPT, basic::options::option, basic::options::OptionKeys::in::file::s, basic::options::OptionKeys::frags::scoring::scoring, and viewer_main().

my_main()

void* my_main

(

void *

)

References align_helix(), utility::options::OptionKeys::options::exit, fit_helix_in_map(), and basic::options::option.

Referenced by main().

Variable Documentation

TR

basic::Tracer TR("apps.public.DRRAFTER.fit_helix_in_map") ( "apps.public.DRRAFTER.fit_helix_in_map"  )

static