enumerate_junctions.Design Class Reference

Public Member Functions
def	__init__ (self, component)
def	get_current_n_term_dhr (self)
def	get_current_c_term_dhr (self)
def	get_current_n_term (self)
def	get_current_c_term (self)
def	length (self)
def	number_of_components (self)
def	append_component (self, component, n_term, attach_seq, attach_length)
def	output_string (self)
def	get_informative_name (self)
def	print (self)
def	output_valid (self, options)
def	attach_valid (self, options, min_additional_junctions_next_step)
def	output (self, output_file)

Public Attributes
	components

Constructor & Destructor Documentation

__init__()

def enumerate_junctions.Design.__init__	(		self,
			component
	)

Referenced by pyrosetta.distributed.tasks.taskbase.TaskBase.__setstate__().

Member Function Documentation

append_component()

def enumerate_junctions.Design.append_component	(		self,
			component,
			n_term,
			attach_seq,
			attach_length
	)

References enumerate_junctions.Design.components, enumerate_junctions.Design.get_current_c_term(), enumerate_junctions.Design.get_current_n_term(), if(), and basic::options::OptionKeys::ufv::insert.insert.

attach_valid()

def enumerate_junctions.Design.attach_valid	(		self,
			options,
			min_additional_junctions_next_step
	)

References if(), enumerate_junctions.Component.length, enumerate_junctions.DHR.length, enumerate_junctions.Junction.length, SecondaryStructureChunk.length(), numeric::IntervalSet< T >.length(), numeric::IntervalSet< double >.length(), RMS_ScoringScheme.length(), numeric::xyzTriple< platform::Size >.length(), numeric::xyzTriple< T >.length(), numeric::xyzVector< GLfloat >.length(), numeric::xyzVector< T >.length(), numeric::xyzVector< float >.length(), numeric::xyzVector< core::Real >.length(), numeric::xyzVector< Real >.length(), numeric::xyzVector< double >.length(), numeric::xyzVector< int >.length(), ObjexxFCL::CArray< T >.length(), ObjexxFCL::CArrayP< T >.length(), ObjexxFCL::ChunkVector< T >.length(), ObjexxFCL::Cstring.length(), ObjexxFCL::FArray1< T >.length(), ObjexxFCL::Fstring.length(), enumerate_junctions.Design.length(), enumerate_junctions.Design.number_of_components(), and return.

get_current_c_term()

def enumerate_junctions.Design.get_current_c_term

(

self

)

References enumerate_junctions.Design.components, and return.

Referenced by enumerate_junctions.Design.append_component().

get_current_c_term_dhr()

def enumerate_junctions.Design.get_current_c_term_dhr

(

self

)

References enumerate_junctions.Design.components, if(), ObjexxFCL.len(), and return.

get_current_n_term()

def enumerate_junctions.Design.get_current_n_term

(

self

)

References enumerate_junctions.Design.components, and return.

Referenced by enumerate_junctions.Design.append_component().

get_current_n_term_dhr()

def enumerate_junctions.Design.get_current_n_term_dhr

(

self

)

References enumerate_junctions.Design.components, if(), ObjexxFCL.len(), and return.

get_informative_name()

def enumerate_junctions.Design.get_informative_name

(

self

)

References enumerate_junctions.Design.components, pyrosetta.tests.distributed.test_dask.format, return, and binder.split().

length()

def enumerate_junctions.Design.length

(

self

)

References enumerate_junctions.Design.components, and return.

Referenced by enumerate_junctions.Design.attach_valid(), enumerate_junctions.Design.output_string(), enumerate_junctions.Design.output_valid(), enumerate_junctions.DHR.print(), enumerate_junctions.Junction.print(), enumerate_junctions.Junction.to_component(), enumerate_junctions.DHR.write_to_file(), and enumerate_junctions.Junction.write_to_file().

number_of_components()

def enumerate_junctions.Design.number_of_components

(

self

)

References enumerate_junctions.Design.components, if(), and return.

Referenced by enumerate_junctions.Design.attach_valid(), enumerate_junctions.Design.output_string(), and enumerate_junctions.Design.output_valid().

output()

def enumerate_junctions.Design.output	(		self,
			output_file
	)

References pyrosetta.tests.distributed.test_dask.format, and enumerate_junctions.Design.output_string().

output_string()

def enumerate_junctions.Design.output_string

(

self

)

References enumerate_junctions.Design.components, pyrosetta.tests.distributed.test_dask.format, enumerate_junctions.Component.length, enumerate_junctions.DHR.length, enumerate_junctions.Junction.length, SecondaryStructureChunk.length(), numeric::IntervalSet< T >.length(), numeric::IntervalSet< double >.length(), RMS_ScoringScheme.length(), numeric::xyzTriple< platform::Size >.length(), numeric::xyzTriple< T >.length(), numeric::xyzVector< GLfloat >.length(), numeric::xyzVector< T >.length(), numeric::xyzVector< float >.length(), numeric::xyzVector< core::Real >.length(), numeric::xyzVector< Real >.length(), numeric::xyzVector< double >.length(), numeric::xyzVector< int >.length(), ObjexxFCL::CArray< T >.length(), ObjexxFCL::CArrayP< T >.length(), ObjexxFCL::ChunkVector< T >.length(), ObjexxFCL::Cstring.length(), ObjexxFCL::FArray1< T >.length(), ObjexxFCL::Fstring.length(), enumerate_junctions.Design.length(), enumerate_junctions.Design.number_of_components(), and return.

Referenced by enumerate_junctions.Design.output(), and enumerate_junctions.Design.print().

output_valid()

def enumerate_junctions.Design.output_valid	(		self,
			options
	)

References pyrosetta.tests.distributed.test_dask.format, if(), enumerate_junctions.Component.length, enumerate_junctions.DHR.length, enumerate_junctions.Junction.length, SecondaryStructureChunk.length(), numeric::IntervalSet< T >.length(), numeric::IntervalSet< double >.length(), RMS_ScoringScheme.length(), numeric::xyzTriple< platform::Size >.length(), numeric::xyzTriple< T >.length(), numeric::xyzVector< GLfloat >.length(), numeric::xyzVector< T >.length(), numeric::xyzVector< float >.length(), numeric::xyzVector< core::Real >.length(), numeric::xyzVector< Real >.length(), numeric::xyzVector< double >.length(), numeric::xyzVector< int >.length(), ObjexxFCL::CArray< T >.length(), ObjexxFCL::CArrayP< T >.length(), ObjexxFCL::ChunkVector< T >.length(), ObjexxFCL::Cstring.length(), ObjexxFCL::FArray1< T >.length(), ObjexxFCL::Fstring.length(), enumerate_junctions.Design.length(), enumerate_junctions.Design.number_of_components(), enumerate_junctions.Design.print(), and return.

print()

def enumerate_junctions.Design.print

(

self

)

References pyrosetta.tests.distributed.test_dask.format, and enumerate_junctions.Design.output_string().

Referenced by enumerate_junctions.Design.output_valid().

Member Data Documentation

components

enumerate_junctions.Design.components

Referenced by enumerate_junctions.Design.append_component(), enumerate_junctions.Design.get_current_c_term(), enumerate_junctions.Design.get_current_c_term_dhr(), enumerate_junctions.Design.get_current_n_term(), enumerate_junctions.Design.get_current_n_term_dhr(), enumerate_junctions.Design.get_informative_name(), enumerate_junctions.Design.length(), enumerate_junctions.Design.number_of_components(), and enumerate_junctions.Design.output_string().

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The documentation for this class was generated from the following file:

• src/apps/pilot/brunette/enumerate_junctions.py