enumerate_junctions.Component Class Reference

Public Member Functions
def	__init__ (self, start, pdb, chain, n_term_res_trim, c_term_res_trim, n_term_dhr, c_term_dhr, propogate, repeat_length, junction, length)
def	set_term_seq (self, n_term_seq, c_term_seq)
def	set_n_term_seq (self, n_term_seq)
def	set_c_term_seq (self, c_term_seq)
def	to_string (self)

Public Attributes
	start
	pdb
	chain
	n_term_res_trim
	c_term_res_trim
	n_term_dhr
	c_term_dhr
	propogate
	repeat_length
	junction
	length
	n_term_seq
	c_term_seq

Static Public Attributes
bool	start = False
string	pdb = ""
int	n_term_res_trim = 0
int	c_term_res_trim = 0
string	n_term_dhr = ""
string	c_term_dhr = ""
string	n_term_seq = ""
string	c_term_seq = ""
string	chain = ""
int	propogate = 0
int	repeat_length = 0
int	n_term_attach_length = 0
int	c_term_attach_length = 0
int	length = 0
bool	locked_seq = False
bool	locked_struct = False

Constructor & Destructor Documentation

__init__()

def enumerate_junctions.Component.__init__	(		self,
			start,
			pdb,
			chain,
			n_term_res_trim,
			c_term_res_trim,
			n_term_dhr,
			c_term_dhr,
			propogate,
			repeat_length,
			junction,
			length
	)

Referenced by pyrosetta.distributed.tasks.taskbase.TaskBase.__setstate__().

Member Function Documentation

set_c_term_seq()

def enumerate_junctions.Component.set_c_term_seq	(		self,
			c_term_seq
	)

References enumerate_junctions.Component.c_term_seq, if(), and enumerate_junctions.Component.locked_seq.

set_n_term_seq()

def enumerate_junctions.Component.set_n_term_seq	(		self,
			n_term_seq
	)

References if(), enumerate_junctions.Component.locked_seq, and enumerate_junctions.Component.n_term_seq.

set_term_seq()

def enumerate_junctions.Component.set_term_seq	(		self,
			n_term_seq,
			c_term_seq
	)

References if(), and enumerate_junctions.Component.locked_seq.

to_string()

def enumerate_junctions.Component.to_string

(

self

)

References enumerate_junctions.Component.c_term_attach_length, enumerate_junctions.Component.c_term_res_trim, enumerate_junctions.Component.c_term_seq, enumerate_junctions.Component.chain, enumerate_junctions.DHR.chain, enumerate_junctions.Junction.chain, HelixHit.chain, pyrosetta.tests.distributed.test_dask.format, enumerate_junctions.Component.n_term_attach_length, enumerate_junctions.Component.n_term_res_trim, enumerate_junctions.Component.n_term_seq, enumerate_junctions.Component.pdb, enumerate_junctions.DHR.pdb, enumerate_junctions.Junction.pdb, HelixHit.pdb, DisulfEpos.pdb, enumerate_junctions.Component.propogate, return, enumerate_junctions.Component.start, utility::json_spirit::Json_grammer< Value_type, Iter_type >::definition< ScannerT >.start(), and numeric::MultiDimensionalHistogram.start().

Member Data Documentation

c_term_attach_length

int enumerate_junctions.Component.c_term_attach_length = 0

static

Referenced by enumerate_junctions.Component.to_string().

c_term_dhr [1/2]

string enumerate_junctions.Component.c_term_dhr = ""

static

c_term_dhr [2/2]

enumerate_junctions.Component.c_term_dhr

c_term_res_trim [1/2]

int enumerate_junctions.Component.c_term_res_trim = 0

static

Referenced by enumerate_junctions.Component.to_string().

c_term_res_trim [2/2]

enumerate_junctions.Component.c_term_res_trim

Referenced by enumerate_junctions.Component.to_string().

c_term_seq [1/2]

string enumerate_junctions.Component.c_term_seq = ""

static

Referenced by enumerate_junctions.Component.set_c_term_seq(), and enumerate_junctions.Component.to_string().

c_term_seq [2/2]

enumerate_junctions.Component.c_term_seq

Referenced by enumerate_junctions.Component.set_c_term_seq(), and enumerate_junctions.Component.to_string().

chain [1/2]

string enumerate_junctions.Component.chain = ""

static

Referenced by enumerate_junctions.Junction.to_component(), enumerate_junctions.DHR.to_component(), and enumerate_junctions.Component.to_string().

chain [2/2]

enumerate_junctions.Component.chain

Referenced by enumerate_junctions.Junction.to_component(), enumerate_junctions.DHR.to_component(), and enumerate_junctions.Component.to_string().

junction

enumerate_junctions.Component.junction

length [1/2]

int enumerate_junctions.Component.length = 0

static

Referenced by enumerate_junctions.Design.attach_valid(), enumerate_junctions.Design.output_string(), enumerate_junctions.Design.output_valid(), enumerate_junctions.DHR.print(), enumerate_junctions.Junction.print(), enumerate_junctions.Junction.to_component(), enumerate_junctions.DHR.write_to_file(), and enumerate_junctions.Junction.write_to_file().

length [2/2]

enumerate_junctions.Component.length

Referenced by enumerate_junctions.Design.attach_valid(), enumerate_junctions.Design.output_string(), enumerate_junctions.Design.output_valid(), enumerate_junctions.DHR.print(), enumerate_junctions.Junction.print(), enumerate_junctions.Junction.to_component(), enumerate_junctions.DHR.write_to_file(), and enumerate_junctions.Junction.write_to_file().

locked_seq

bool enumerate_junctions.Component.locked_seq = False

static

Referenced by enumerate_junctions.Component.set_c_term_seq(), enumerate_junctions.Component.set_n_term_seq(), and enumerate_junctions.Component.set_term_seq().

locked_struct

bool enumerate_junctions.Component.locked_struct = False

static

n_term_attach_length

int enumerate_junctions.Component.n_term_attach_length = 0

static

Referenced by enumerate_junctions.Component.to_string().

n_term_dhr [1/2]

string enumerate_junctions.Component.n_term_dhr = ""

static

n_term_dhr [2/2]

enumerate_junctions.Component.n_term_dhr

n_term_res_trim [1/2]

int enumerate_junctions.Component.n_term_res_trim = 0

static

Referenced by enumerate_junctions.Component.to_string().

n_term_res_trim [2/2]

enumerate_junctions.Component.n_term_res_trim

Referenced by enumerate_junctions.Component.to_string().

n_term_seq [1/2]

string enumerate_junctions.Component.n_term_seq = ""

static

Referenced by enumerate_junctions.Component.set_n_term_seq(), and enumerate_junctions.Component.to_string().

n_term_seq [2/2]

enumerate_junctions.Component.n_term_seq

Referenced by enumerate_junctions.Component.set_n_term_seq(), and enumerate_junctions.Component.to_string().

pdb [1/2]

string enumerate_junctions.Component.pdb = ""

static

Referenced by enumerate_junctions.DHR.print(), enumerate_junctions.Junction.print(), enumerate_junctions.Junction.to_component(), enumerate_junctions.DHR.to_component(), enumerate_junctions.Component.to_string(), enumerate_junctions.DHR.write_to_file(), and enumerate_junctions.Junction.write_to_file().

pdb [2/2]

enumerate_junctions.Component.pdb

Referenced by enumerate_junctions.DHR.print(), enumerate_junctions.Junction.print(), enumerate_junctions.Junction.to_component(), enumerate_junctions.DHR.to_component(), enumerate_junctions.Component.to_string(), enumerate_junctions.DHR.write_to_file(), and enumerate_junctions.Junction.write_to_file().

propogate [1/2]

int enumerate_junctions.Component.propogate = 0

static

Referenced by enumerate_junctions.Component.to_string().

propogate [2/2]

enumerate_junctions.Component.propogate

Referenced by enumerate_junctions.Component.to_string().

repeat_length [1/2]

int enumerate_junctions.Component.repeat_length = 0

static

Referenced by enumerate_junctions.DHR.print(), and enumerate_junctions.DHR.to_component().

repeat_length [2/2]

enumerate_junctions.Component.repeat_length

Referenced by enumerate_junctions.DHR.print(), and enumerate_junctions.DHR.to_component().

start [1/2]

bool enumerate_junctions.Component.start = False

static

Referenced by pyrosetta.tests.distributed.test_gil.HeartBeat.__enter__(), and enumerate_junctions.Component.to_string().

start [2/2]

enumerate_junctions.Component.start

Referenced by pyrosetta.tests.distributed.test_gil.HeartBeat.__enter__(), and enumerate_junctions.Component.to_string().

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The documentation for this class was generated from the following file:

• src/apps/pilot/brunette/enumerate_junctions.py