Referenced by pyrosetta.distributed.cluster.exceptions.InputFileError.__init__(), pyrosetta.distributed.cluster.exceptions.OutputError.__init__(), pyrosetta.distributed.viewer.core.ViewerInputError.__init__(), pyrosetta.distributed.viewer.modules.ViewerInputError.__init__(), pyrosetta.distributed.viewer.modules.setStyle.__init__(), pyrosetta.toolbox.atom_pair_energy._atom_pair_energy_table(), ez_setup._do_download(), pyrosetta.distributed.viewer.modules._pdbstring_to_pose(), pyrosetta.distributed.viewer.modules._pose_to_residue_chain_tuples(), add_xyz_to_pose.append_to_pdb(), auto-DRRAFTER_setup.auto_setup_helices(), binder.bind_constructor(), binder.bind_member_functions_for_call_back(), build.build_generated_bindings(), helpers.cache_array(), get_junctions_from_legos.collect_junctions(), add_xyz_to_pose.collect_xyz(), PyMOL-Rosetta-relay-client.connect_to_rosetta_tcp_server(), build.create_package(), build.create_wheel(), pyrosetta.distributed.cluster.core.PyRosettaCluster.distribute(), test.T900_distributed.e(), enumerate_junctions.enumerate_tranform_db(), self-test.execute(), update_ui_project.execute(), build.execute(), auto-DRRAFTER_setup_next_round.figure_out_next_round(), test.T850_SubClassing.A.foo_int(), test.T850_SubClassing.A.foo_string(), test.T850_SubClassing.A.foo_value(), test.T850_SubClassing.A.foo_value_sp(), formatter< arg_join< It, Sentinel, Char >, Char >.format(), formatter< Char[N], Char >.format(), detail::fallback_formatter< T, Char, enable_if_t< is_streamable< T, Char >::value > >.format(), formatter< tuple_arg_join< Char, T... >, Char >.format(), formatter< std::chrono::time_point< std::chrono::system_clock >, Char >.format(), formatter< void *, Char >.format(), detail.format_duration_value(), detail.format_float(), detail::chrono_formatter< FormatContext, OutputIt, Rep, Period >.format_localized(), fprintf(), binder::Context.generate(), update_ui_project.generate_app_project_files(), update_ui_project.generate_app_shell_scripts(), build.generate_bindings(), build.generate_cmake_file(), build.generate_documentation(), update_ui_project.generate_root_project(), build.generate_rosetta_cmake_files(), build.generate_rosetta_external_cmake_files(), update_ui_project.generate_rosetta_external_project_files(), update_ui_project.generate_rosetta_libraries_project_files(), update_ui_project.generate_rosetta_project_files(), enumerate_junctions.generate_structures_wrapper(), basic::citation_manager::CitationCollection.get_citations_formatted(), build.get_compiler_version(), utility.get_current_date(), build.get_defines(), erraser_util.get_fasta(), basic::citation_manager::Citation.get_formatted_citation(), enumerate_junctions.Design.get_informative_name(), auto-DRRAFTER_setup_next_round.get_results(), pyrosetta.distributed.cluster.converter_tasks.get_scores_dict(), auto-DRRAFTER_setup_next_round.get_top_ten_models_from_silent_files(), build.install_llvm_tool(), build.install_pybind11(), helpers.job_title(), enumerate_junctions.listener(), progress_bar.main(), self-test.main(), build.main(), sphinx-doc-generator.main(), update_ui_project.main(), combine_ContactMaps.main(), submit_jobs.make_job_files_and_submit(), pyrosetta.mpi.mpi_init(), pyrosetta.mpi.MPIJobDistributor(), job_manager.DatabaseWindow.open_page(), enumerate_junctions.Design.output(), add_xyz_to_pose.output_lego_names(), enumerate_junctions.Design.output_string(), enumerate_junctions.Design.output_valid(), pyrosetta.distributed.cluster.converter_tasks.parse_client(), pyrosetta.distributed.cluster.converter_tasks.parse_decoy_name(), pyrosetta.distributed.cluster.converter_tasks.parse_input_packed_pose(), pyrosetta.distributed.cluster.converter_tasks.parse_instance_kwargs(), pyrosetta.distributed.cluster.converter_tasks.parse_scorefile(), erraser_util.pdb2fasta(), erraser_util.pdb2rosetta(), percent_subangstrom.plot_benchmark(), bin_torsions.plot_histograms(), enumerate_junctions.Design.print(), enumerate_junctions.DHR.print(), enumerate_junctions.Junction.print(), pyrosetta.toolbox.atom_pair_energy.print_atom_pair_energy_table(), pyrosetta.toolbox.atom_pair_energy.print_residue_pair_energies(), printf(), test.T850_SubClassing.PyOverloadTest.pure_test_p(), test.T850_SubClassing.PyOverloadTest.pure_test_ref(), best_beta_backbones.report_proportion_accessible(), best_beta_backbones.report_proportion_accessible_alpha(), erraser_util.rna_rosetta_ready_set(), erraser_util.rosetta2phenix_merge_back(), job_manager.CommandLauncher.run(), job_manager.DeleteJob.run(), job_manager.SaveMovie.run(), build-and-run-tests.run_binder_self_tests(), build.run_cmake(), self-test.run_test(), beta_sc_scan.scan_chi(), pyrosetta.toolbox.load_ligand.sdf2mdl(), erraser_wrapper.seq_rebuild_new(), pyrosetta.tests.distributed.test_viewer.TestViewer.setUp(), build.setup_source_directory_links(), pyrosetta.distributed.viewer.core.Viewer.show(), detail.snprintf_float(), sprintf(), detail.strftime(), submit_jobs.submit_jobs(), PyMOL-Rosetta-relay-client.tcp_client_main(), test.T850_SubClassing.PyOverloadTest.test_p(), test.T850_SubClassing.PyOverloadTest.test_ref(), pyrosetta.tests.distributed.test_dask_worker.TestDaskArgs.test_worker_extra(), enumerate_junctions.Component.to_string(), to_wstring(), traceCAs(), vfprintf(), detail.vprintf(), vprintf(), vsprintf(), pyrosetta.distributed.dask.worker_extra(), write_distances(), write_output_files(), enumerate_junctions.DHR.write_to_file(), and enumerate_junctions.Junction.write_to_file().
