enumerate_junctions.DHR Class Reference

Public Member Functions
def	__init__ (self, name, length, pdb, repeat_seq)
def	print (self)
def	write_to_file (self, file)
def	to_component (self, propogate)

Public Attributes
	length
	name
	pdb
	repeat_length
	repeat_seq

Static Public Attributes
int	length = 0
int	repeat_length = 0
string	name = ""
string	pdb = ""
string	repeat_seq = ""
string	chain = "A"

Constructor & Destructor Documentation

__init__()

def enumerate_junctions.DHR.__init__	(		self,
			name,
			length,
			pdb,
			repeat_seq
	)

Referenced by pyrosetta.distributed.tasks.taskbase.TaskBase.__setstate__().

Member Function Documentation

print()

def enumerate_junctions.DHR.print

(

self

)

References pyrosetta.tests.distributed.test_dask.format, enumerate_junctions.Component.length, enumerate_junctions.DHR.length, enumerate_junctions.Junction.length, SecondaryStructureChunk.length(), numeric::IntervalSet< T >.length(), numeric::IntervalSet< double >.length(), RMS_ScoringScheme.length(), numeric::xyzTriple< T >.length(), numeric::xyzTriple< platform::Size >.length(), numeric::xyzVector< float >.length(), numeric::xyzVector< int >.length(), numeric::xyzVector< GLfloat >.length(), numeric::xyzVector< Real >.length(), numeric::xyzVector< core::Real >.length(), numeric::xyzVector< T >.length(), numeric::xyzVector< double >.length(), ObjexxFCL::CArray< T >.length(), ObjexxFCL::CArrayP< T >.length(), ObjexxFCL::ChunkVector< T >.length(), ObjexxFCL::Cstring.length(), ObjexxFCL::FArray1< T >.length(), ObjexxFCL::Fstring.length(), enumerate_junctions.Design.length(), PerformanceBenchmark.name(), enumerate_junctions.DHR.name, pointGroupHit.name(), Arch.name(), basic::database::schema_generator::Column.name(), options_class.Option.name, basic::sampling::orientations::QuatDBMetadata.name, numeric::expression_parser::VariableToken.name(), numeric::expression_parser::FunctionToken.name(), numeric::expression_parser::VariableExpression.name(), numeric::Polynomial_1d.name(), detail::named_arg< Char, T >.name, detail::named_arg_info< Char >.name, detail::named_arg_info< char_type >.name, detail::arg_ref< Char >::value.name, pyrosetta.distributed.docs.ComponentDoc.name, ui::network::BowmanModel::FunctionIdentifier.name, ui::network::FunctionID.name, ui::network::Bowman::BackEnd.name, ui::task::PNode.name, ui::task::File.name(), ui::task::FileTableModel::Row.name, ui::task::Functor.name(), ui::task::ProjectTasksModel::Row.name, ui::task::Task::Job.name, ui::task::Task.name(), utility::file::FileName.name(), utility::file::PathName.name(), utility::options::VariantOption< O >.name(), basic::tensorflow_manager::RosettaTensorflowProtocolBase.name(), utility::options::Option.name(), utility::options::ScalarOption_T_< IntegerOptionKey, int >.name(), utility::options::ScalarOption_T_< FileOptionKey, file::FileName >.name(), utility::options::ScalarOption_T_< RealOptionKey, double >.name(), utility::options::ScalarOption_T_< AnyOptionKey, T >.name(), utility::options::ScalarOption_T_< BooleanOptionKey, bool >.name(), utility::options::ScalarOption_T_< K, T >.name(), utility::options::ScalarOption_T_< StringOptionKey, std::string >.name(), utility::options::ScalarOption_T_< PathOptionKey, file::PathName >.name(), utility::options::VectorOption_T_< ResidueChainVectorOptionKey, int >.name(), utility::options::VectorOption_T_< AnyVectorOptionKey, T >.name(), utility::options::VectorOption_T_< StringVectorOptionKey, std::string >.name(), utility::options::VectorOption_T_< BooleanVectorOptionKey, bool >.name(), utility::options::VectorOption_T_< RealVectorOptionKey, double >.name(), utility::options::VectorOption_T_< FileVectorOptionKey, file::FileName >.name(), utility::options::VectorOption_T_< K, T >.name(), utility::options::VectorOption_T_< PathVectorOptionKey, file::PathName >.name(), utility::options::VectorOption_T_< IntegerVectorOptionKey, int >.name(), schema.Job.name(), utility::tag::tag_grammar::definition< Scanner >.name, utility::tag::XMLSchemaAttribute.name(), utility::tag::XMLSchemaRestriction.name(), utility::tag::XMLSchemaComplexType.name(), utility::tag::XMLSchemaElement.name(), utility::io::TarFileHeader.name, enumerate_junctions.Component.pdb, enumerate_junctions.DHR.pdb, enumerate_junctions.Junction.pdb, HelixHit.pdb, DisulfEpos.pdb, enumerate_junctions.Component.repeat_length, enumerate_junctions.DHR.repeat_length, and enumerate_junctions.DHR.repeat_seq.

to_component()

def enumerate_junctions.DHR.to_component	(		self,
			propogate
	)

References enumerate_junctions.Component.chain, enumerate_junctions.DHR.chain, enumerate_junctions.Junction.chain, HelixHit.chain, PerformanceBenchmark.name(), enumerate_junctions.DHR.name, pointGroupHit.name(), Arch.name(), basic::database::schema_generator::Column.name(), options_class.Option.name, basic::sampling::orientations::QuatDBMetadata.name, numeric::expression_parser::VariableToken.name(), numeric::expression_parser::FunctionToken.name(), numeric::expression_parser::VariableExpression.name(), numeric::Polynomial_1d.name(), basic::tensorflow_manager::RosettaTensorflowProtocolBase.name(), detail::named_arg< Char, T >.name, detail::named_arg_info< Char >.name, detail::named_arg_info< char_type >.name, detail::arg_ref< Char >::value.name, pyrosetta.distributed.docs.ComponentDoc.name, ui::network::BowmanModel::FunctionIdentifier.name, ui::network::FunctionID.name, ui::network::Bowman::BackEnd.name, ui::task::PNode.name, ui::task::File.name(), ui::task::FileTableModel::Row.name, ui::task::Functor.name(), ui::task::ProjectTasksModel::Row.name, ui::task::Task::Job.name, ui::task::Task.name(), utility::file::FileName.name(), utility::file::PathName.name(), utility::options::VariantOption< O >.name(), utility::options::Option.name(), utility::options::ScalarOption_T_< BooleanOptionKey, bool >.name(), utility::options::ScalarOption_T_< RealOptionKey, double >.name(), utility::options::ScalarOption_T_< K, T >.name(), utility::options::ScalarOption_T_< FileOptionKey, file::FileName >.name(), utility::options::ScalarOption_T_< IntegerOptionKey, int >.name(), utility::options::ScalarOption_T_< AnyOptionKey, T >.name(), utility::options::ScalarOption_T_< StringOptionKey, std::string >.name(), utility::options::ScalarOption_T_< PathOptionKey, file::PathName >.name(), utility::options::VectorOption_T_< K, T >.name(), utility::options::VectorOption_T_< ResidueChainVectorOptionKey, int >.name(), utility::options::VectorOption_T_< IntegerVectorOptionKey, int >.name(), utility::options::VectorOption_T_< StringVectorOptionKey, std::string >.name(), utility::options::VectorOption_T_< FileVectorOptionKey, file::FileName >.name(), utility::options::VectorOption_T_< BooleanVectorOptionKey, bool >.name(), utility::options::VectorOption_T_< AnyVectorOptionKey, T >.name(), utility::options::VectorOption_T_< PathVectorOptionKey, file::PathName >.name(), utility::options::VectorOption_T_< RealVectorOptionKey, double >.name(), schema.Job.name(), utility::io::TarFileHeader.name, utility::tag::tag_grammar::definition< Scanner >.name, utility::tag::XMLSchemaAttribute.name(), utility::tag::XMLSchemaRestriction.name(), utility::tag::XMLSchemaComplexType.name(), utility::tag::XMLSchemaElement.name(), enumerate_junctions.Component.pdb, enumerate_junctions.DHR.pdb, enumerate_junctions.Junction.pdb, HelixHit.pdb, DisulfEpos.pdb, enumerate_junctions.Component.repeat_length, enumerate_junctions.DHR.repeat_length, and return.

write_to_file()

def enumerate_junctions.DHR.write_to_file	(		self,
			file
	)

References pyrosetta.tests.distributed.test_dask.format, enumerate_junctions.Component.length, enumerate_junctions.DHR.length, enumerate_junctions.Junction.length, SecondaryStructureChunk.length(), numeric::IntervalSet< T >.length(), numeric::IntervalSet< double >.length(), RMS_ScoringScheme.length(), numeric::xyzTriple< platform::Size >.length(), numeric::xyzTriple< T >.length(), numeric::xyzVector< float >.length(), numeric::xyzVector< T >.length(), numeric::xyzVector< int >.length(), numeric::xyzVector< double >.length(), numeric::xyzVector< GLfloat >.length(), numeric::xyzVector< core::Real >.length(), numeric::xyzVector< Real >.length(), ObjexxFCL::CArray< T >.length(), ObjexxFCL::CArrayP< T >.length(), ObjexxFCL::ChunkVector< T >.length(), ObjexxFCL::Cstring.length(), ObjexxFCL::FArray1< T >.length(), ObjexxFCL::Fstring.length(), enumerate_junctions.Design.length(), PerformanceBenchmark.name(), enumerate_junctions.DHR.name, pointGroupHit.name(), Arch.name(), basic::database::schema_generator::Column.name(), numeric::expression_parser::VariableExpression.name(), numeric::Polynomial_1d.name(), basic::tensorflow_manager::RosettaTensorflowProtocolBase.name(), schema.Job.name(), options_class.Option.name, basic::sampling::orientations::QuatDBMetadata.name, numeric::expression_parser::VariableToken.name(), numeric::expression_parser::FunctionToken.name(), detail::named_arg< Char, T >.name, detail::named_arg_info< char_type >.name, detail::named_arg_info< Char >.name, detail::arg_ref< Char >::value.name, pyrosetta.distributed.docs.ComponentDoc.name, ui::network::BowmanModel::FunctionIdentifier.name, ui::network::FunctionID.name, ui::network::Bowman::BackEnd.name, ui::task::PNode.name, ui::task::File.name(), ui::task::FileTableModel::Row.name, ui::task::Functor.name(), ui::task::ProjectTasksModel::Row.name, ui::task::Task::Job.name, ui::task::Task.name(), utility::file::FileName.name(), utility::file::PathName.name(), utility::options::VariantOption< O >.name(), utility::options::Option.name(), utility::options::ScalarOption_T_< FileOptionKey, file::FileName >.name(), utility::options::ScalarOption_T_< RealOptionKey, double >.name(), utility::options::ScalarOption_T_< AnyOptionKey, T >.name(), utility::options::ScalarOption_T_< IntegerOptionKey, int >.name(), utility::options::ScalarOption_T_< BooleanOptionKey, bool >.name(), utility::options::ScalarOption_T_< K, T >.name(), utility::options::ScalarOption_T_< PathOptionKey, file::PathName >.name(), utility::options::ScalarOption_T_< StringOptionKey, std::string >.name(), utility::options::VectorOption_T_< RealVectorOptionKey, double >.name(), utility::options::VectorOption_T_< IntegerVectorOptionKey, int >.name(), utility::options::VectorOption_T_< PathVectorOptionKey, file::PathName >.name(), utility::options::VectorOption_T_< ResidueChainVectorOptionKey, int >.name(), utility::options::VectorOption_T_< K, T >.name(), utility::options::VectorOption_T_< FileVectorOptionKey, file::FileName >.name(), utility::options::VectorOption_T_< BooleanVectorOptionKey, bool >.name(), utility::options::VectorOption_T_< StringVectorOptionKey, std::string >.name(), utility::options::VectorOption_T_< AnyVectorOptionKey, T >.name(), utility::tag::tag_grammar::definition< Scanner >.name, utility::tag::XMLSchemaAttribute.name(), utility::tag::XMLSchemaRestriction.name(), utility::tag::XMLSchemaComplexType.name(), utility::tag::XMLSchemaElement.name(), utility::io::TarFileHeader.name, enumerate_junctions.Component.pdb, enumerate_junctions.DHR.pdb, enumerate_junctions.Junction.pdb, HelixHit.pdb, DisulfEpos.pdb, and enumerate_junctions.DHR.repeat_seq.

Member Data Documentation

chain

string enumerate_junctions.DHR.chain = "A"

static

Referenced by enumerate_junctions.Junction.to_component(), enumerate_junctions.DHR.to_component(), and enumerate_junctions.Component.to_string().

length [1/2]

int enumerate_junctions.DHR.length = 0

static

Referenced by enumerate_junctions.Design.attach_valid(), enumerate_junctions.Design.output_string(), enumerate_junctions.Design.output_valid(), enumerate_junctions.DHR.print(), enumerate_junctions.Junction.print(), enumerate_junctions.Junction.to_component(), enumerate_junctions.DHR.write_to_file(), and enumerate_junctions.Junction.write_to_file().

length [2/2]

enumerate_junctions.DHR.length

Referenced by enumerate_junctions.Design.attach_valid(), enumerate_junctions.Design.output_string(), enumerate_junctions.Design.output_valid(), enumerate_junctions.DHR.print(), enumerate_junctions.Junction.print(), enumerate_junctions.Junction.to_component(), enumerate_junctions.DHR.write_to_file(), and enumerate_junctions.Junction.write_to_file().

name [1/2]

string enumerate_junctions.DHR.name = ""

static

Referenced by pyrosetta.distributed.docs.ComponentDoc.__repr__(), options_class.Option.getCName(), options_class.Option.getDoxygenRow(), options_class.Option.getMarkdownRow(), options_class.Option.getOptionKeysCC(), options_class.Option.getWikiTableRow(), enumerate_junctions.DHR.print(), enumerate_junctions.DHR.to_component(), and enumerate_junctions.DHR.write_to_file().

name [2/2]

enumerate_junctions.DHR.name

Referenced by pyrosetta.distributed.docs.ComponentDoc.__repr__(), options_class.Option.getCName(), options_class.Option.getDoxygenRow(), options_class.Option.getMarkdownRow(), options_class.Option.getOptionKeysCC(), options_class.Option.getWikiTableRow(), enumerate_junctions.DHR.print(), enumerate_junctions.DHR.to_component(), and enumerate_junctions.DHR.write_to_file().

pdb [1/2]

string enumerate_junctions.DHR.pdb = ""

static

Referenced by enumerate_junctions.DHR.print(), enumerate_junctions.Junction.print(), enumerate_junctions.Junction.to_component(), enumerate_junctions.DHR.to_component(), enumerate_junctions.Component.to_string(), enumerate_junctions.DHR.write_to_file(), and enumerate_junctions.Junction.write_to_file().

pdb [2/2]

enumerate_junctions.DHR.pdb

Referenced by enumerate_junctions.DHR.print(), enumerate_junctions.Junction.print(), enumerate_junctions.Junction.to_component(), enumerate_junctions.DHR.to_component(), enumerate_junctions.Component.to_string(), enumerate_junctions.DHR.write_to_file(), and enumerate_junctions.Junction.write_to_file().

repeat_length [1/2]

int enumerate_junctions.DHR.repeat_length = 0

static

Referenced by enumerate_junctions.DHR.print(), and enumerate_junctions.DHR.to_component().

repeat_length [2/2]

enumerate_junctions.DHR.repeat_length

Referenced by enumerate_junctions.DHR.print(), and enumerate_junctions.DHR.to_component().

repeat_seq [1/2]

string enumerate_junctions.DHR.repeat_seq = ""

static

Referenced by enumerate_junctions.DHR.print(), and enumerate_junctions.DHR.write_to_file().

repeat_seq [2/2]

enumerate_junctions.DHR.repeat_seq

Referenced by enumerate_junctions.DHR.print(), and enumerate_junctions.DHR.write_to_file().

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The documentation for this class was generated from the following file:

• src/apps/pilot/brunette/enumerate_junctions.py