enumerate_junctions.Junction Class Reference

Public Member Functions
def	__init__ (self, n_term, c_term, length, pdb)
def	print (self)
def	write_to_file (self, file)
def	to_component (self)

Public Attributes
	length
	n_term
	c_term
	pdb

Static Public Attributes
int	length = 0
string	n_term = ""
string	c_term = ""
string	pdb = ""
string	chain = "A"

Constructor & Destructor Documentation

__init__()

def enumerate_junctions.Junction.__init__	(		self,
			n_term,
			c_term,
			length,
			pdb
	)

Referenced by pyrosetta.distributed.tasks.taskbase.TaskBase.__setstate__().

Member Function Documentation

print()

def enumerate_junctions.Junction.print

(

self

)

References enumerate_junctions.Junction.c_term, pyrosetta.tests.distributed.test_dask.format, enumerate_junctions.Component.length, SecondaryStructureChunk.length(), numeric::IntervalSet< double >.length(), numeric::IntervalSet< T >.length(), RMS_ScoringScheme.length(), numeric::xyzTriple< T >.length(), numeric::xyzTriple< platform::Size >.length(), numeric::xyzVector< Real >.length(), numeric::xyzVector< T >.length(), numeric::xyzVector< float >.length(), numeric::xyzVector< double >.length(), numeric::xyzVector< int >.length(), numeric::xyzVector< core::Real >.length(), numeric::xyzVector< GLfloat >.length(), ObjexxFCL::CArray< T >.length(), ObjexxFCL::CArrayP< T >.length(), ObjexxFCL::ChunkVector< T >.length(), ObjexxFCL::Cstring.length(), ObjexxFCL::FArray1< T >.length(), ObjexxFCL::Fstring.length(), enumerate_junctions.Design.length(), enumerate_junctions.DHR.length, enumerate_junctions.Junction.length, enumerate_junctions.Junction.n_term, enumerate_junctions.Component.pdb, enumerate_junctions.DHR.pdb, enumerate_junctions.Junction.pdb, HelixHit.pdb, and DisulfEpos.pdb.

to_component()

def enumerate_junctions.Junction.to_component

(

self

)

References enumerate_junctions.Junction.c_term, enumerate_junctions.Component.chain, enumerate_junctions.DHR.chain, enumerate_junctions.Junction.chain, HelixHit.chain, enumerate_junctions.Component.length, enumerate_junctions.DHR.length, enumerate_junctions.Junction.length, SecondaryStructureChunk.length(), numeric::IntervalSet< T >.length(), numeric::IntervalSet< double >.length(), RMS_ScoringScheme.length(), numeric::xyzTriple< T >.length(), numeric::xyzTriple< platform::Size >.length(), numeric::xyzVector< Real >.length(), numeric::xyzVector< T >.length(), numeric::xyzVector< double >.length(), numeric::xyzVector< GLfloat >.length(), numeric::xyzVector< int >.length(), numeric::xyzVector< float >.length(), numeric::xyzVector< core::Real >.length(), ObjexxFCL::CArray< T >.length(), ObjexxFCL::CArrayP< T >.length(), ObjexxFCL::ChunkVector< T >.length(), ObjexxFCL::Cstring.length(), ObjexxFCL::FArray1< T >.length(), ObjexxFCL::Fstring.length(), enumerate_junctions.Design.length(), enumerate_junctions.Junction.n_term, enumerate_junctions.Component.pdb, enumerate_junctions.DHR.pdb, enumerate_junctions.Junction.pdb, HelixHit.pdb, DisulfEpos.pdb, and return.

write_to_file()

def enumerate_junctions.Junction.write_to_file	(		self,
			file
	)

References enumerate_junctions.Junction.c_term, pyrosetta.tests.distributed.test_dask.format, enumerate_junctions.Component.length, SecondaryStructureChunk.length(), numeric::IntervalSet< double >.length(), numeric::IntervalSet< T >.length(), RMS_ScoringScheme.length(), numeric::xyzTriple< T >.length(), numeric::xyzTriple< platform::Size >.length(), numeric::xyzVector< Real >.length(), numeric::xyzVector< T >.length(), numeric::xyzVector< float >.length(), numeric::xyzVector< double >.length(), numeric::xyzVector< int >.length(), numeric::xyzVector< core::Real >.length(), numeric::xyzVector< GLfloat >.length(), ObjexxFCL::CArray< T >.length(), ObjexxFCL::CArrayP< T >.length(), ObjexxFCL::ChunkVector< T >.length(), ObjexxFCL::Cstring.length(), ObjexxFCL::FArray1< T >.length(), ObjexxFCL::Fstring.length(), enumerate_junctions.Design.length(), enumerate_junctions.DHR.length, enumerate_junctions.Junction.length, enumerate_junctions.Junction.n_term, enumerate_junctions.Component.pdb, enumerate_junctions.DHR.pdb, enumerate_junctions.Junction.pdb, HelixHit.pdb, and DisulfEpos.pdb.

Member Data Documentation

c_term [1/2]

string enumerate_junctions.Junction.c_term = ""

static

Referenced by enumerate_junctions.Junction.print(), enumerate_junctions.Junction.to_component(), and enumerate_junctions.Junction.write_to_file().

c_term [2/2]

enumerate_junctions.Junction.c_term

Referenced by enumerate_junctions.Junction.print(), enumerate_junctions.Junction.to_component(), and enumerate_junctions.Junction.write_to_file().

chain

string enumerate_junctions.Junction.chain = "A"

static

Referenced by enumerate_junctions.Junction.to_component(), enumerate_junctions.DHR.to_component(), and enumerate_junctions.Component.to_string().

length [1/2]

int enumerate_junctions.Junction.length = 0

static

Referenced by enumerate_junctions.Design.attach_valid(), enumerate_junctions.Design.output_string(), enumerate_junctions.Design.output_valid(), enumerate_junctions.DHR.print(), enumerate_junctions.Junction.print(), enumerate_junctions.Junction.to_component(), enumerate_junctions.DHR.write_to_file(), and enumerate_junctions.Junction.write_to_file().

length [2/2]

enumerate_junctions.Junction.length

Referenced by enumerate_junctions.Design.attach_valid(), enumerate_junctions.Design.output_string(), enumerate_junctions.Design.output_valid(), enumerate_junctions.DHR.print(), enumerate_junctions.Junction.print(), enumerate_junctions.Junction.to_component(), enumerate_junctions.DHR.write_to_file(), and enumerate_junctions.Junction.write_to_file().

n_term [1/2]

string enumerate_junctions.Junction.n_term = ""

static

Referenced by enumerate_junctions.Junction.print(), enumerate_junctions.Junction.to_component(), and enumerate_junctions.Junction.write_to_file().

n_term [2/2]

enumerate_junctions.Junction.n_term

Referenced by enumerate_junctions.Junction.print(), enumerate_junctions.Junction.to_component(), and enumerate_junctions.Junction.write_to_file().

pdb [1/2]

string enumerate_junctions.Junction.pdb = ""

static

Referenced by enumerate_junctions.DHR.print(), enumerate_junctions.Junction.print(), enumerate_junctions.Junction.to_component(), enumerate_junctions.DHR.to_component(), enumerate_junctions.Component.to_string(), enumerate_junctions.DHR.write_to_file(), and enumerate_junctions.Junction.write_to_file().

pdb [2/2]

enumerate_junctions.Junction.pdb

Referenced by enumerate_junctions.DHR.print(), enumerate_junctions.Junction.print(), enumerate_junctions.Junction.to_component(), enumerate_junctions.DHR.to_component(), enumerate_junctions.Component.to_string(), enumerate_junctions.DHR.write_to_file(), and enumerate_junctions.Junction.write_to_file().

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The documentation for this class was generated from the following file:

• src/apps/pilot/brunette/enumerate_junctions.py