numeric::xyzTransform< T > Class Template Reference

#include <xyzTransform.hh>

Classes
struct	Line
struct	Plane

Public Types
typedef xyzTransform< T >	Transform
typedef xyzMatrix< T >	Matrix
typedef xyzVector< T >	Vector
typedef xyzVector< T >	V
typedef utility::fixedsizearray1< T, 6 >	T6
typedef std::numeric_limits< T >	LIM

Public Member Functions
	xyzTransform ()
	xyzTransform (Matrix const &rin)
	xyzTransform (Vector const &tin)
	xyzTransform (Matrix const &rin, Vector const &tin)
	xyzTransform (T6 const &_rt6)
Transform &	from_four_points (Vector const &c, Vector const &u, Vector const &v, Vector const &w)
	xyzTransform (Vector const &u, Vector const &v, Vector const &w)
	xyzTransform (Vector const &c, Vector const &u, Vector const &v, Vector const &w)
T const &	xx () const
T const &	xy () const
T const &	xz () const
T const &	yx () const
T const &	yy () const
T const &	yz () const
T const &	zx () const
T const &	zy () const
T const &	zz () const
T const &	px () const
T const &	py () const
T const &	pz () const
T const &	x () const
T const &	y () const
T const &	z () const
T &	xx ()
T &	xy ()
T &	xz ()
T &	yx ()
T &	yy ()
T &	yz ()
T &	zx ()
T &	zy ()
T &	zz ()
T &	px ()
T &	py ()
T &	pz ()
T &	x ()
T &	y ()
T &	z ()
Transform	inverse () const
Transform	operator~ () const
T	distance (Transform const &b) const
T	distance_squared (Transform const &b) const
Vector	xform (Vector const &v) const
Vector	inv_xform (Vector const &v) const
template<typename T2 >
T2	operator() (T2 const &x)
void	to_quaternion (T &qw, T &qx, T &qy, T &qz) const
void	from_quaternion (T const &qw, T const &qx, T const &qy, T const &qz)
xyzVector< T >	euler_angles_rad () const
	see numeric/HomogeneousTransform More...
xyzVector< T >	euler_angles_deg () const
xyzTransform< T > &	from_euler_angles_rad (T const &phi, T const &psi, T const &theta)
xyzTransform< T > &	from_euler_angles_rad (xyzVector< T > const &euler)
xyzTransform< T > &	from_euler_angles_deg (T const &phi, T const &psi, T const &theta)
xyzTransform< T > &	from_euler_angles_deg (xyzVector< T > const &euler)
T6	rt6 () const
xyzTransform &	rt6 (T6 const &rt6)
xyzTransform &	rt6 (T const &i, T const &j, T const &k, T const &l, T const &m, T const &n)
uint64_t	hash64 (T const &cw=0.1, T const &aw=360./1024.) const
uint64_t	symhash64 (T const &cw=0.1, T const &aw=360./1024.) const
int	intersect3D_2Planes (Plane Pn1, Plane Pn2, Line *L) const
void	rotation_axis (Vector &axis, Vector &cen, T &angle) const
Vector	rotation_axis () const
T	rotation_angle_degrees () const
T	rotation_angle () const
T	rotation_cosine () const
T	rotation_sine () const
T	approx_lever_distance (Transform const &o, T const &lever=1.0) const
bool	bad () const
bool	badfast () const

Static Public Member Functions
static xyzTransform< T >	identity ()
static xyzTransform< T >	BAD_XFORM ()
static T6	BAD_RT6 ()
static Transform	rot (Matrix const &rot, Vector const &o_cen, Vector const &cen)
static Transform	rot (Matrix const &rot, Vector const &cen=Vector(0, 0, 0))
static Transform	rot (Vector const &axs, T const &ang, Vector const &cen=Vector(0, 0, 0))
static Transform	rot_deg (Vector const &axs, T const &ang, Vector const &cen=Vector(0, 0, 0))
static Transform	align (Vector const &to, Vector const &from=Vector(1, 0, 0))
static Transform	align_fast (V const &to, V const &from=V(1.0, 0.0, 0.0))

Public Attributes
Matrix	R
Vector	t

Friends
bool	operator== (Transform const &a, Transform const &b)
bool	operator!= (Transform const &a, Transform const &b)
Transform	operator+ (Transform const &a, Vector const &b)
Transform	operator- (Transform const &a, Vector const &b)
Transform	operator+ (Vector const &a, Transform const &b)
Transform	operator- (Vector const &a, Transform const &b)
Transform	operator* (Transform const &a, T const &b)
Transform	operator* (T const &a, Transform const &b)
Transform	operator* (Transform const &a, Matrix const &b)
Transform	operator* (Matrix const &a, Transform const &b)
Vector	operator* (Transform const &x, Vector const &v)
Transform	operator* (Transform const &a, Transform const &b)
Transform	operator- (Transform const &a, Transform const &b)

Member Typedef Documentation

LIM

template<typename T >

typedef std::numeric_limits<T> numeric::xyzTransform< T >::LIM

Matrix

template<typename T >

typedef xyzMatrix<T> numeric::xyzTransform< T >::Matrix

T6

template<typename T >

typedef utility::fixedsizearray1< T, 6 > numeric::xyzTransform< T >::T6

Transform

template<typename T >

typedef xyzTransform<T> numeric::xyzTransform< T >::Transform

V

template<typename T >

typedef xyzVector<T> numeric::xyzTransform< T >::V

Vector

template<typename T >

typedef xyzVector<T> numeric::xyzTransform< T >::Vector

Constructor & Destructor Documentation

xyzTransform() [1/7]

template<typename T >

numeric::xyzTransform< T >::xyzTransform ( )

inline

Referenced by numeric::xyzTransform< T >::BAD_XFORM(), numeric::xyzTransform< T >::identity(), numeric::xyzTransform< T >::inverse(), and numeric::xyzTransform< T >::operator~().

xyzTransform() [2/7]

template<typename T >

numeric::xyzTransform< T >::xyzTransform ( Matrix const &  rin )

inline

xyzTransform() [3/7]

template<typename T >

numeric::xyzTransform< T >::xyzTransform ( Vector const &  tin )

inline

xyzTransform() [4/7]

template<typename T >

numeric::xyzTransform< T >::xyzTransform ( Matrix const &  rin, Vector const &  tin  )

inline

xyzTransform() [5/7]

template<typename T >

numeric::xyzTransform< T >::xyzTransform ( T6 const &  _rt6 )

inline

References numeric::xyzTransform< T >::rt6().

xyzTransform() [6/7]

template<typename T >

numeric::xyzTransform< T >::xyzTransform ( Vector const &  u, Vector const &  v, Vector const &  w  )

inline

References numeric::xyzTransform< T >::from_four_points(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::u, kmeans_adaptive_kernel_density_bb_dependent_rotlib::v, and w.

xyzTransform() [7/7]

template<typename T >

numeric::xyzTransform< T >::xyzTransform ( Vector const &  c, Vector const &  u, Vector const &  v, Vector const &  w  )

inline

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::c, numeric::xyzTransform< T >::from_four_points(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::u, kmeans_adaptive_kernel_density_bb_dependent_rotlib::v, and w.

Member Function Documentation

align()

template<typename T >

static Transform numeric::xyzTransform< T >::align ( Vector const &  to, Vector const &  from = Vector(1,0,0)  )

inlinestatic

References basic::options::OptionKeys::hotspot::angle, numeric::xyzVector< T >::cross(), max(), min(), and numeric::rotation_matrix().

align_fast()

template<typename T >

static Transform numeric::xyzTransform< T >::align_fast ( V const &  to, V const &  from = V(1.0, 0.0, 0.0)  )

inlinestatic

References pyrosetta.distributed.cluster.exceptions::T.

approx_lever_distance()

template<typename T >

T numeric::xyzTransform< T >::approx_lever_distance ( Transform const &  o, T const &  lever = 1.0  ) const

inline

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::ang, numeric::xyzTransform< T >::inverse(), basic::options::OptionKeys::out::file::o, numeric::xyzTransform< T >::rotation_angle(), and numeric::xyzTransform< T >::t.

bad()

template<typename T >

bool numeric::xyzTransform< T >::bad ( ) const

inline

References utility::isnan(), numeric::xyzTransform< T >::px(), numeric::xyzTransform< T >::py(), numeric::xyzTransform< T >::pz(), numeric::xyzTransform< T >::xx(), numeric::xyzTransform< T >::xy(), numeric::xyzTransform< T >::xz(), numeric::xyzTransform< T >::yx(), numeric::xyzTransform< T >::yy(), numeric::xyzTransform< T >::yz(), numeric::xyzTransform< T >::zx(), numeric::xyzTransform< T >::zy(), and numeric::xyzTransform< T >::zz().

Referenced by harvest_motifs_one(), numeric::xyzTransform< T >::rt6(), and sicdock_thread_num().

BAD_RT6()

template<typename T >

static T6 numeric::xyzTransform< T >::BAD_RT6 ( )

inlinestatic

Referenced by numeric::xyzTransform< T >::rt6().

BAD_XFORM()

template<typename T >

static xyzTransform<T> numeric::xyzTransform< T >::BAD_XFORM ( )

inlinestatic

References cols(), and numeric::xyzTransform< T >::xyzTransform().

Referenced by numeric::xyzTransform< T >::rt6().

badfast()

template<typename T >

bool numeric::xyzTransform< T >::badfast ( ) const

inline

References utility::isnan(), numeric::xyzTransform< T >::px(), and numeric::xyzTransform< T >::xx().

distance()

template<typename T >

T numeric::xyzTransform< T >::distance ( Transform const &  b ) const

inline

References compute_difference::b, and numeric::xyzTransform< T >::distance_squared().

distance_squared()

template<typename T >

T numeric::xyzTransform< T >::distance_squared ( Transform const &  b ) const

inline

References compute_difference::b, numeric::xyzTransform< T >::R, and numeric::xyzTransform< T >::t.

Referenced by numeric::xyzTransform< T >::distance().

euler_angles_deg()

template<typename T >

xyzVector< T > numeric::xyzTransform< T >::euler_angles_deg ( ) const

inline

References numeric::xyzTransform< T >::euler_angles_rad(), numeric::constants::d::radians_to_degrees, and pyrosetta.distributed.cluster.exceptions::T.

Referenced by numeric::xyzTransform< T >::hash64(), and numeric::xyzTransform< T >::rt6().

euler_angles_rad()

template<typename T >

xyzVector< T > numeric::xyzTransform< T >::euler_angles_rad ( ) const

inline

see numeric/HomogeneousTransform

References test.T009_Exceptions::e, numeric::constants::d::pi, numeric::constants::d::pi_2, numeric::xyzTransform< T >::R, numeric::sin_cos_range(), and pyrosetta.distributed.cluster.exceptions::T.

Referenced by numeric::xyzTransform< T >::euler_angles_deg().

from_euler_angles_deg() [1/2]

template<typename T >

xyzTransform<T>& numeric::xyzTransform< T >::from_euler_angles_deg ( T const &  phi, T const &  psi, T const &  theta  )

inline

References C, numeric::constants::d::degrees_to_radians, numeric::xyzTransform< T >::from_euler_angles_rad(), oop_conformations::phi, oop_conformations::psi, and pyrosetta.distributed.cluster.exceptions::T.

Referenced by numeric::xyzTransform< T >::rt6().

from_euler_angles_deg() [2/2]

template<typename T >

xyzTransform<T>& numeric::xyzTransform< T >::from_euler_angles_deg ( xyzVector< T > const &  euler )

inline

References numeric::constants::d::degrees_to_radians, numeric::xyzTransform< T >::from_euler_angles_rad(), and pyrosetta.distributed.cluster.exceptions::T.

from_euler_angles_rad() [1/2]

template<typename T >

xyzTransform<T>& numeric::xyzTransform< T >::from_euler_angles_rad ( T const &  phi, T const &  psi, T const &  theta  )

inline

References oop_conformations::phi, oop_conformations::psi, and numeric::xyzTransform< T >::R.

Referenced by numeric::xyzTransform< T >::from_euler_angles_deg(), and numeric::xyzTransform< T >::from_euler_angles_rad().

from_euler_angles_rad() [2/2]

template<typename T >

xyzTransform<T>& numeric::xyzTransform< T >::from_euler_angles_rad ( xyzVector< T > const &  euler )

inline

References numeric::xyzTransform< T >::from_euler_angles_rad(), numeric::xyzVector< T >::x(), numeric::xyzVector< T >::y(), and numeric::xyzVector< T >::z().

from_four_points()

template<typename T >

Transform& numeric::xyzTransform< T >::from_four_points ( Vector const &  c, Vector const &  u, Vector const &  v, Vector const &  w  )

inline

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::c, numeric::cross(), numeric::xyzTransform< T >::R, numeric::xyzTransform< T >::t, kmeans_adaptive_kernel_density_bb_dependent_rotlib::u, kmeans_adaptive_kernel_density_bb_dependent_rotlib::v, and w.

Referenced by numeric::xyzTransform< T >::xyzTransform().

from_quaternion()

template<typename T >

void numeric::xyzTransform< T >::from_quaternion ( T const &  qw, T const &  qx, T const &  qy, T const &  qz  )

inline

References docking::s, numeric::xyzTransform< T >::xx(), numeric::xyzTransform< T >::xy(), numeric::xyzTransform< T >::xz(), spectral_cluster_kmeans_adaptive_kernel_density_bb_dependent_rotlib::Y, numeric::xyzTransform< T >::yx(), numeric::xyzTransform< T >::yy(), numeric::xyzTransform< T >::yz(), numeric::xyzTransform< T >::zx(), numeric::xyzTransform< T >::zy(), and numeric::xyzTransform< T >::zz().

hash64()

template<typename T >

uint64_t numeric::xyzTransform< T >::hash64 ( T const &  cw = 0.1, T const &  aw = 360./1024.  ) const

inline

References a, compute_difference::b, kmeans_adaptive_kernel_density_bb_dependent_rotlib::c, test.T009_Exceptions::e, numeric::xyzTransform< T >::euler_angles_deg(), create_a3b_hbs::k, numeric::xyzTransform< T >::t, numeric::xyzTransform< T >::x(), numeric::xyzTransform< T >::y(), and numeric::xyzTransform< T >::z().

Referenced by numeric::xyzTransform< T >::symhash64().

identity()

template<typename T >

static xyzTransform<T> numeric::xyzTransform< T >::identity ( )

inlinestatic

References numeric::xyzTransform< T >::xyzTransform().

Referenced by ui::ui_protocols::helical_bundle::HelicalBundlePoseDrawOpenGLWidget::reset_nonparametric_rotation_xform().

intersect3D_2Planes()

template<typename T >

int numeric::xyzTransform< T >::intersect3D_2Planes ( Plane  Pn1, Plane  Pn2, Line *  L  ) const

inline

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::ax, numeric::dot(), spectral_cluster_kmeans_adaptive_kernel_density_bb_dependent_rotlib::L, numeric::xyzTransform< T >::Plane::n, kmeans_adaptive_kernel_density_bb_dependent_rotlib::u, kmeans_adaptive_kernel_density_bb_dependent_rotlib::v, and numeric::xyzTransform< T >::Plane::V0.

Referenced by numeric::xyzTransform< T >::rotation_axis().

inv_xform()

template<typename T >

Vector numeric::xyzTransform< T >::inv_xform ( Vector const &  v ) const

inline

References numeric::xyzTransform< T >::R, numeric::xyzTransform< T >::t, and kmeans_adaptive_kernel_density_bb_dependent_rotlib::v.

inverse()

template<typename T >

Transform numeric::xyzTransform< T >::inverse ( ) const

inline

References numeric::xyzTransform< T >::R, numeric::xyzTransform< T >::t, and numeric::xyzTransform< T >::xyzTransform().

Referenced by numeric::xyzTransform< T >::approx_lever_distance(), compute_motif_score(), main(), motif_score_pose(), and numeric::xyzTransform< T >::symhash64().

operator()()

template<typename T >

template<typename T2 >

T2 numeric::xyzTransform< T >::operator() ( T2 const &  x )

inline

References numeric::xyzTransform< T >::x().

operator~()

template<typename T >

Transform numeric::xyzTransform< T >::operator~ ( ) const

inline

References numeric::xyzTransform< T >::R, numeric::xyzTransform< T >::t, and numeric::xyzTransform< T >::xyzTransform().

px() [1/2]

template<typename T >

T& numeric::xyzTransform< T >::px ( )

inline

References numeric::xyzTransform< T >::t.

px() [2/2]

template<typename T >

T const& numeric::xyzTransform< T >::px ( ) const

inline

References numeric::xyzTransform< T >::t.

Referenced by numeric::xyzTransform< T >::bad(), numeric::xyzTransform< T >::badfast(), and numeric::xyzTransform< T >::rt6().

py() [1/2]

template<typename T >

T& numeric::xyzTransform< T >::py ( )

inline

References numeric::xyzTransform< T >::t.

py() [2/2]

template<typename T >

T const& numeric::xyzTransform< T >::py ( ) const

inline

References numeric::xyzTransform< T >::t.

Referenced by numeric::xyzTransform< T >::bad(), and numeric::xyzTransform< T >::rt6().

pz() [1/2]

template<typename T >

T& numeric::xyzTransform< T >::pz ( )

inline

References numeric::xyzTransform< T >::t.

pz() [2/2]

template<typename T >

T const& numeric::xyzTransform< T >::pz ( ) const

inline

References numeric::xyzTransform< T >::t.

Referenced by numeric::xyzTransform< T >::bad(), and numeric::xyzTransform< T >::rt6().

rot() [1/3]

template<typename T >

static Transform numeric::xyzTransform< T >::rot ( Matrix const &  rot, Vector const &  cen = Vector(0,0,0)  )

inlinestatic

References numeric::xyzTransform< T >::rot().

rot() [2/3]

template<typename T >

static Transform numeric::xyzTransform< T >::rot ( Matrix const &  rot, Vector const &  o_cen, Vector const &  cen  )

inlinestatic

Referenced by numeric::xyzTransform< T >::rot(), and numeric::xyzTransform< T >::rot_deg().

rot() [3/3]

template<typename T >

static Transform numeric::xyzTransform< T >::rot ( Vector const &  axs, T const &  ang, Vector const &  cen = Vector(0,0,0)  )

inlinestatic

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::ang, numeric::xyzTransform< T >::rot(), and numeric::rotation_matrix().

Referenced by numeric::xyzTransform< T >::rot().

rot_deg()

template<typename T >

static Transform numeric::xyzTransform< T >::rot_deg ( Vector const &  axs, T const &  ang, Vector const &  cen = Vector(0,0,0)  )

inlinestatic

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::ang, numeric::xyzTransform< T >::rot(), and numeric::rotation_matrix_degrees().

Referenced by ui::ui_protocols::helical_bundle::HelicalBundlePoseDrawOpenGLWidget::mouseMoveEvent().

rotation_angle()

template<typename T >

T numeric::xyzTransform< T >::rotation_angle ( ) const

inline

References basic::options::OptionKeys::hotspot::angle, and numeric::xyzTransform< T >::R.

Referenced by numeric::xyzTransform< T >::approx_lever_distance().

rotation_angle_degrees()

template<typename T >

T numeric::xyzTransform< T >::rotation_angle_degrees ( ) const

inline

References basic::options::OptionKeys::hotspot::angle, numeric::conversions::degrees(), and numeric::xyzTransform< T >::R.

rotation_axis() [1/2]

template<typename T >

Vector numeric::xyzTransform< T >::rotation_axis ( ) const

inline

References basic::options::OptionKeys::hotspot::angle, and numeric::xyzTransform< T >::R.

rotation_axis() [2/2]

template<typename T >

void numeric::xyzTransform< T >::rotation_axis ( Vector &  axis, Vector &  cen, T &  angle  ) const

inline

References basic::options::OptionKeys::hotspot::angle, numeric::xyzTransform< T >::intersect3D_2Planes(), max(), min(), numeric::xyzTransform< T >::Line::P0, numeric::xyzTransform< T >::Line::P1, p2, numeric::xyzTransform< T >::R, pyrosetta.distributed.cluster.exceptions::T, and utility_exit_with_message.

rotation_cosine()

template<typename T >

T numeric::xyzTransform< T >::rotation_cosine ( ) const

inline

References numeric::xyzTransform< T >::R, and numeric::sin_cos_range().

rotation_sine()

template<typename T >

T numeric::xyzTransform< T >::rotation_sine ( ) const

inline

References numeric::xyzTransform< T >::R, and numeric::sin_cos_range().

rt6() [1/3]

template<typename T >

T6 numeric::xyzTransform< T >::rt6 ( ) const

inline

References numeric::xyzTransform< T >::bad(), numeric::xyzTransform< T >::BAD_RT6(), test.T009_Exceptions::e, numeric::xyzTransform< T >::euler_angles_deg(), numeric::xyzTransform< T >::px(), numeric::xyzTransform< T >::py(), and numeric::xyzTransform< T >::pz().

Referenced by numeric::xyzTransform< T >::rt6(), and numeric::xyzTransform< T >::xyzTransform().

rt6() [2/3]

template<typename T >

xyzTransform& numeric::xyzTransform< T >::rt6 ( T const &  i, T const &  j, T const &  k, T const &  l, T const &  m, T const &  n  )

inline

References numeric::xyzTransform< T >::BAD_XFORM(), numeric::xyzTransform< T >::from_euler_angles_deg(), create_a3b_hbs::i, utility::isnan(), create_a3b_hbs::j, create_a3b_hbs::k, extract_by_sidechain_sasa_score::l, kmeans_adaptive_kernel_density_bb_dependent_rotlib::m, kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, numeric::xyzTransform< T >::px(), numeric::xyzTransform< T >::py(), and numeric::xyzTransform< T >::pz().

rt6() [3/3]

template<typename T >

xyzTransform& numeric::xyzTransform< T >::rt6 ( T6 const &  rt6 )

inline

References numeric::xyzTransform< T >::BAD_XFORM(), numeric::xyzTransform< T >::from_euler_angles_deg(), utility::isnan(), numeric::xyzTransform< T >::px(), numeric::xyzTransform< T >::py(), numeric::xyzTransform< T >::pz(), and numeric::xyzTransform< T >::rt6().

symhash64()

template<typename T >

uint64_t numeric::xyzTransform< T >::symhash64 ( T const &  cw = 0.1, T const &  aw = 360./1024.  ) const

inline

References numeric::xyzTransform< T >::hash64(), and numeric::xyzTransform< T >::inverse().

to_quaternion()

template<typename T >

void numeric::xyzTransform< T >::to_quaternion ( T &  qw, T &  qx, T &  qy, T &  qz  ) const

inline

References utility::copysign(), create_a3b_hbs::r, numeric::xyzTransform< T >::xx(), numeric::xyzTransform< T >::xy(), numeric::xyzTransform< T >::xz(), numeric::xyzTransform< T >::yx(), numeric::xyzTransform< T >::yy(), numeric::xyzTransform< T >::yz(), numeric::xyzTransform< T >::zx(), numeric::xyzTransform< T >::zy(), and numeric::xyzTransform< T >::zz().

x() [1/2]

template<typename T >

T& numeric::xyzTransform< T >::x ( )

inline

References numeric::xyzTransform< T >::t.

Referenced by PyMOL-Rosetta-relay-client.XYZCoord::__init__(), PyMOL-RosettaServer.XYZCoord::__init__(), PyMOL-Rosetta-relay-client.XYZCoord::__str__(), PyMOL-RosettaServer.XYZCoord::__str__(), and pyrosetta.PyMOLRosettaServer.XYZCoord::__str__().

x() [2/2]

template<typename T >

T const& numeric::xyzTransform< T >::x ( ) const

inline

References numeric::xyzTransform< T >::t.

Referenced by PyMOL-Rosetta-relay-client.XYZCoord::__init__(), PyMOL-RosettaServer.XYZCoord::__init__(), PyMOL-Rosetta-relay-client.XYZCoord::__str__(), PyMOL-RosettaServer.XYZCoord::__str__(), pyrosetta.PyMOLRosettaServer.XYZCoord::__str__(), numeric::xyzTransform< T >::hash64(), and numeric::xyzTransform< T >::operator()().

xform()

template<typename T >

Vector numeric::xyzTransform< T >::xform ( Vector const &  v ) const

inline

References numeric::xyzTransform< T >::R, numeric::xyzTransform< T >::t, and kmeans_adaptive_kernel_density_bb_dependent_rotlib::v.

xx() [1/2]

template<typename T >

T& numeric::xyzTransform< T >::xx ( )

inline

References numeric::xyzTransform< T >::R.

xx() [2/2]

template<typename T >

T const& numeric::xyzTransform< T >::xx ( ) const

inline

References numeric::xyzTransform< T >::R.

Referenced by numeric::xyzTransform< T >::bad(), numeric::xyzTransform< T >::badfast(), numeric::xyzTransform< T >::from_quaternion(), and numeric::xyzTransform< T >::to_quaternion().

xy() [1/2]

template<typename T >

T& numeric::xyzTransform< T >::xy ( )

inline

References numeric::xyzTransform< T >::R.

xy() [2/2]

template<typename T >

T const& numeric::xyzTransform< T >::xy ( ) const

inline

References numeric::xyzTransform< T >::R.

Referenced by numeric::xyzTransform< T >::bad(), numeric::xyzTransform< T >::from_quaternion(), and numeric::xyzTransform< T >::to_quaternion().

xz() [1/2]

template<typename T >

T& numeric::xyzTransform< T >::xz ( )

inline

References numeric::xyzTransform< T >::R.

xz() [2/2]

template<typename T >

T const& numeric::xyzTransform< T >::xz ( ) const

inline

References numeric::xyzTransform< T >::R.

Referenced by numeric::xyzTransform< T >::bad(), numeric::xyzTransform< T >::from_quaternion(), and numeric::xyzTransform< T >::to_quaternion().

y() [1/2]

template<typename T >

T& numeric::xyzTransform< T >::y ( )

inline

References numeric::xyzTransform< T >::t.

Referenced by PyMOL-Rosetta-relay-client.XYZCoord::__init__(), PyMOL-RosettaServer.XYZCoord::__init__(), PyMOL-Rosetta-relay-client.XYZCoord::__str__(), PyMOL-RosettaServer.XYZCoord::__str__(), and pyrosetta.PyMOLRosettaServer.XYZCoord::__str__().

y() [2/2]

template<typename T >

T const& numeric::xyzTransform< T >::y ( ) const

inline

References numeric::xyzTransform< T >::t.

Referenced by PyMOL-Rosetta-relay-client.XYZCoord::__init__(), PyMOL-RosettaServer.XYZCoord::__init__(), PyMOL-Rosetta-relay-client.XYZCoord::__str__(), PyMOL-RosettaServer.XYZCoord::__str__(), pyrosetta.PyMOLRosettaServer.XYZCoord::__str__(), and numeric::xyzTransform< T >::hash64().

yx() [1/2]

template<typename T >

T& numeric::xyzTransform< T >::yx ( )

inline

References numeric::xyzTransform< T >::R.

yx() [2/2]

template<typename T >

T const& numeric::xyzTransform< T >::yx ( ) const

inline

References numeric::xyzTransform< T >::R.

Referenced by numeric::xyzTransform< T >::bad(), numeric::xyzTransform< T >::from_quaternion(), and numeric::xyzTransform< T >::to_quaternion().

yy() [1/2]

template<typename T >

T& numeric::xyzTransform< T >::yy ( )

inline

References numeric::xyzTransform< T >::R.

yy() [2/2]

template<typename T >

T const& numeric::xyzTransform< T >::yy ( ) const

inline

References numeric::xyzTransform< T >::R.

Referenced by numeric::xyzTransform< T >::bad(), numeric::xyzTransform< T >::from_quaternion(), and numeric::xyzTransform< T >::to_quaternion().

yz() [1/2]

template<typename T >

T& numeric::xyzTransform< T >::yz ( )

inline

References numeric::xyzTransform< T >::R.

yz() [2/2]

template<typename T >

T const& numeric::xyzTransform< T >::yz ( ) const

inline

References numeric::xyzTransform< T >::R.

Referenced by numeric::xyzTransform< T >::bad(), numeric::xyzTransform< T >::from_quaternion(), and numeric::xyzTransform< T >::to_quaternion().

z() [1/2]

template<typename T >

T& numeric::xyzTransform< T >::z ( )

inline

References numeric::xyzTransform< T >::t.

Referenced by PyMOL-Rosetta-relay-client.XYZCoord::__init__(), PyMOL-RosettaServer.XYZCoord::__init__(), PyMOL-Rosetta-relay-client.XYZCoord::__str__(), PyMOL-RosettaServer.XYZCoord::__str__(), and pyrosetta.PyMOLRosettaServer.XYZCoord::__str__().

z() [2/2]

template<typename T >

T const& numeric::xyzTransform< T >::z ( ) const

inline

References numeric::xyzTransform< T >::t.

Referenced by PyMOL-Rosetta-relay-client.XYZCoord::__init__(), PyMOL-RosettaServer.XYZCoord::__init__(), PyMOL-Rosetta-relay-client.XYZCoord::__str__(), PyMOL-RosettaServer.XYZCoord::__str__(), pyrosetta.PyMOLRosettaServer.XYZCoord::__str__(), and numeric::xyzTransform< T >::hash64().

zx() [1/2]

template<typename T >

T& numeric::xyzTransform< T >::zx ( )

inline

References numeric::xyzTransform< T >::R.

zx() [2/2]

template<typename T >

T const& numeric::xyzTransform< T >::zx ( ) const

inline

References numeric::xyzTransform< T >::R.

Referenced by numeric::xyzTransform< T >::bad(), numeric::xyzTransform< T >::from_quaternion(), and numeric::xyzTransform< T >::to_quaternion().

zy() [1/2]

template<typename T >

T& numeric::xyzTransform< T >::zy ( )

inline

References numeric::xyzTransform< T >::R.

zy() [2/2]

template<typename T >

T const& numeric::xyzTransform< T >::zy ( ) const

inline

References numeric::xyzTransform< T >::R.

Referenced by numeric::xyzTransform< T >::bad(), numeric::xyzTransform< T >::from_quaternion(), and numeric::xyzTransform< T >::to_quaternion().

zz() [1/2]

template<typename T >

T& numeric::xyzTransform< T >::zz ( )

inline

References numeric::xyzTransform< T >::R.

zz() [2/2]

template<typename T >

T const& numeric::xyzTransform< T >::zz ( ) const

inline

References numeric::xyzTransform< T >::R.

Referenced by numeric::xyzTransform< T >::bad(), numeric::xyzTransform< T >::from_quaternion(), and numeric::xyzTransform< T >::to_quaternion().

Friends And Related Function Documentation

operator!=

template<typename T >

bool operator!= ( Transform const &  a, Transform const &  b  )

friend

operator* [1/6]

template<typename T >

Transform operator* ( Matrix const &  a, Transform const &  b  )

friend

operator* [2/6]

template<typename T >

Transform operator* ( T const &  a, Transform const &  b  )

friend

operator* [3/6]

template<typename T >

Transform operator* ( Transform const &  a, Matrix const &  b  )

friend

operator* [4/6]

template<typename T >

Transform operator* ( Transform const &  a, T const &  b  )

friend

operator* [5/6]

template<typename T >

Transform operator* ( Transform const &  a, Transform const &  b  )

friend

operator* [6/6]

template<typename T >

Vector operator* ( Transform const &  x, Vector const &  v  )

friend

operator+ [1/2]

template<typename T >

Transform operator+ ( Transform const &  a, Vector const &  b  )

friend

operator+ [2/2]

template<typename T >

Transform operator+ ( Vector const &  a, Transform const &  b  )

friend

operator- [1/3]

template<typename T >

Transform operator- ( Transform const &  a, Transform const &  b  )

friend

operator- [2/3]

template<typename T >

Transform operator- ( Transform const &  a, Vector const &  b  )

friend

operator- [3/3]

template<typename T >

Transform operator- ( Vector const &  a, Transform const &  b  )

friend

operator==

template<typename T >

bool operator== ( Transform const &  a, Transform const &  b  )

friend

Member Data Documentation

R

template<typename T >

Matrix numeric::xyzTransform< T >::R

Referenced by TCDock::__dock_base__(), numeric::xyzTransform< T >::distance_squared(), dock(), numeric::xyzTransform< T >::euler_angles_rad(), numeric::xyzTransform< T >::from_euler_angles_rad(), numeric::xyzTransform< T >::from_four_points(), TCDock::get_best_sub1_contact_delta_rotations(), get_cx_xform(), numeric::xyzTransform< T >::inv_xform(), numeric::xyzTransform< T >::inverse(), main(), myxdis(), numeric::xyzTransform< T >::operator~(), TCDock::precompute_intra(), numeric::xyzTransform< T >::rotation_angle(), numeric::xyzTransform< T >::rotation_angle_degrees(), numeric::xyzTransform< T >::rotation_axis(), numeric::xyzTransform< T >::rotation_cosine(), numeric::xyzTransform< T >::rotation_sine(), numeric::xyzTransform< T >::xform(), numeric::xyzTransform< T >::xx(), numeric::xyzTransform< T >::xy(), numeric::xyzTransform< T >::xz(), numeric::xyzTransform< T >::yx(), numeric::xyzTransform< T >::yy(), numeric::xyzTransform< T >::yz(), numeric::xyzTransform< T >::zx(), numeric::xyzTransform< T >::zy(), and numeric::xyzTransform< T >::zz().

t

template<typename T >

Vector numeric::xyzTransform< T >::t

Referenced by TCDock::__dock_base__(), numeric::xyzTransform< T >::approx_lever_distance(), numeric::xyzTransform< T >::distance_squared(), dock(), numeric::xyzTransform< T >::from_four_points(), numeric::xyzTransform< T >::hash64(), numeric::xyzTransform< T >::inv_xform(), numeric::xyzTransform< T >::inverse(), main(), motif_score_pose(), myxdis(), numeric::xyzTransform< T >::operator~(), numeric::xyzTransform< T >::px(), numeric::xyzTransform< T >::py(), numeric::xyzTransform< T >::pz(), numeric::xyzTransform< T >::x(), numeric::xyzTransform< T >::xform(), numeric::xyzTransform< T >::y(), and numeric::xyzTransform< T >::z().

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The documentation for this class was generated from the following files:

• src/numeric/xyzTransform.fwd.hh
• src/numeric/xyzTransform.hh