Variables
	scorefile = open(argv[1]).readlines()

	outfile = open(argv[2])

	extract = open(argv[2]+".sasa.out", 'w')

int	cutoff = 0

dictionary	tags = {}

	line = i.split()

	sasa_score = float(line[1])

	tag = line[2]

	l = outfile.readline()

Variable Documentation

◆ cutoff

extract_by_sidechain_sasa_score.cutoff = 0

Referenced by numeric::interpolation::spline::SplineGenerator.add_boundary_function(), PairDistance.apply(), CloseContactWithResidue.apply(), define_variables(), numeric::kdtree::KDPointList.distance_cutoff(), do_event_prediction(), find_residues_around_mutation(), get_atom_packing_score(), get_atom_vdw(), main(), pep_scan_analysis(), register_options(), run(), RunPepSpec(), BacksideHbondFinderMover.set_atom_sasa_cutoff(), BacksideHbondFinderMover.set_neighbor_distance_cutoff(), setup_roc_curve(), numeric::interpolation.spline_from_file(), and numeric::interpolation.spline_from_stream().

◆ extract

extract_by_sidechain_sasa_score.extract = open(argv[2]+".sasa.out", 'w')

Referenced by main(), and my_main().

◆ l

extract_by_sidechain_sasa_score.l = outfile.readline()

Referenced by adjust_ref_weights(), InterfaceStrandFinderMover.apply(), attach_abego_pools(), utility::BitSet< B >.BitSet(), utility::BitVector< B >.BitVector(), Bola.Bola(), check_cubic_conv_test(), MatchSet.cross(), MatchSet.cross_homodimer(), utility::signals::SignalHub< ReturnType, Signal >.current_links(), ui::task::Node.data_is_fresh(), ui::task::Node.data_upload_finished(), design_test(), dock(), PoseWrap.dump_pdb(), dumpcgo(), ui::task::Node.execute(), utility::file.file_size(), ui::network::FunctionSetupDialog.FunctionSetupDialog(), utility::vectorL_ZeroSelector< bool >.ge(), numeric::fourier::SO3coeffs.genWigner_ds(), getclosest(), ik_his_clamp(), binder.indent(), numeric::interpolation::periodic_range::full.interpolated(), numeric::interpolation::periodic_range::half.interpolated(), intersecting_bpy_axes(), ui::task::Node.is_syncing(), isctfast(), Kernel.Kernel(), rosetta_binders.list_add_on_binder(), rosetta_binders.list_add_on_binder_maybe_has_equal_operator(), ui::task::Updater.listen(), ui::task::Updater.listen_to_updates(), numeric::fourier::SO3coeffs.lm_index(), main(), make_frag_set(), numeric::model_quality.maxsub(), motif_scan(), std.operator<<(), ui::task::Node.operator==(), place_sf4(), place_zns(), pose2frags(), basic::sampling::orientations::QuaternionGrid.QuaternionGrid(), numeric::linear_algebra.qzhes(), numeric::linear_algebra.qzit(), CapriTotalEnergy.read_datafile(), read_jumpcut_file(), read_list_file(), read_res_list(), SphereSample.read_sphere_data(), PoseWrap.replace_scattach_res(), numeric::xyzTransform< T >.rt6(), run(), same_secondary_structure(), SphereSample.sample(), SphereSample.sanity_check(), setup_capri_data(), utility::options::OptionCollection.show_all_hier(), utility::options::OptionCollection.show_table_text(), sic_fast_x(), sicdock_thread_num(), sicfast(), sigmoid_train(), simple_rotamer_recovery(), simulate_ERMS(), numeric::fourier::SHT.so3CombineCoef(), solve_c_svc(), solve_epsilon_svr(), solve_nu_svc(), solve_nu_svr(), solve_one_class(), PoseWrap.ss(), basic::svd::SVD_Solver.svdcmp(), numeric::linear_algebra.svdcmp(), svm_check_parameter(), svm_cross_validation(), svm_group_classes(), svm_load_model(), svm_predict_values(), svm_save_model(), svm_train(), tf_specificity_test(), traverse_for_hbonds(), ui::task::Node.update_from_json(), rosetta_binders::utility_vector_binder< Vector, L, T, Allocator >.utility_vector_binder(), utility::options::OptionCollection.wrapped(), basic::Emitter.write_raw(), and zf_test().

◆ line

extract_by_sidechain_sasa_score.line = i.split()

◆ outfile

extract_by_sidechain_sasa_score.outfile = open(argv[2])

◆ sasa_score

extract_by_sidechain_sasa_score.sasa_score = float(line[1])

Referenced by calc_burial(), main(), and rel_sasa_score().

◆ scorefile

extract_by_sidechain_sasa_score.scorefile = open(argv[1]).readlines()

Referenced by calc_rama_scores(), calc_scores(), correct_dunbrack(), correct_rama(), main(), ScoreFragmentSetMover.run(), and FragmentAssemblyMover.run().

◆ tag

extract_by_sidechain_sasa_score.tag = line[2]

◆ tags

dictionary extract_by_sidechain_sasa_score.tags = {}

Referenced by calc_rmsf_and_avrg(), basic::resource_manager::ResourceLocatorFactory.create_resource_locator(), utility::xsd_util.generate_human_readable_recursive(), utility::xsd_util.generate_human_readable_summary(), utility.get_resnum_and_chain_and_segid(), utility.get_resnum_and_segid(), pyrosetta.io.silent_file_map.SilentFilePoseAccessor.keys(), pyrosetta.io.silent_file_map.SilentFileEnergyAccessor.keys(), ligand_dock_main_jd1(), main(), my_main(), utility::xsd_util.output_all_tag_options(), parse_extra_atom_list(), basic::resource_manager::ResourceManager.read_resources_from_xml(), save_cluster_tree_lite(), and SymmSilentFileTest().

Variables