#include <basic/Tracer.hh>
#include <core/chemical/util.hh>
#include <core/chemical/ResidueTypeSet.fwd.hh>
#include <core/conformation/Residue.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/id/AtomID_Map.hh>
#include <core/import_pose/import_pose.hh>
#include <core/import_pose/pose_stream/util.hh>
#include <core/import_pose/pose_stream/MetaPoseInputStream.hh>
#include <core/scoring/sasa.hh>
#include <core/types.hh>
#include <devel/init.hh>
#include <utility/vector1.hh>
#include <utility/io/ozstream.hh>
#include <iostream>
#include <ObjexxFCL/format.hh>

Functions
vector1< Real >	calc_sasa (Pose const &pose, Real pore_radius)

std::string	calc_burial (Pose const &pose, Real pore_radius, Real boundarySasaThreshold, Real surfaceSasaThreshold)

int	main (int argc, char *argv[])

Variables
static basic::Tracer	tr ("ouputLayerDesignBurial")

Function Documentation

◆ calc_burial()

std::string calc_burial	(	Pose const &	pose,
		Real	pore_radius,
		Real	boundarySasaThreshold,
		Real	surfaceSasaThreshold
	)

References basic::options::OptionKeys::in::file::burial, calc_sasa(), create_a3b_hbs::ii, beta_nonlocal::pose, and extract_by_sidechain_sasa_score::sasa_score.

Referenced by main().

◆ calc_sasa()

vector1< Real> calc_sasa	(	Pose const &	pose,
		Real	pore_radius
	)

References val2thr::atom, create_a3b_hbs::j, and beta_nonlocal::pose.

Referenced by calc_burial().

◆ main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, basic::options::OptionKeys::in::file::burial, calc_burial(), basic::options::OptionKeys::chemical::chemical, utility::io::oc::cout, test.T009_Exceptions::e, basic::init(), gaussian-sampling::input, bin_torsions::output, pyrosetta.distributed.io::pose_from_file, tag, and tag_from_pose().

Variable Documentation

◆ tr

basic::Tracer tr("ouputLayerDesignBurial") ( "ouputLayerDesignBurial" )

static