Directory dependency graph for brunette:
Files | |
| file | abego_predict.cc |
| file | add_xyz_to_pose.py |
| file | aln_to_disulf.cc |
| file | armEval.cc |
| file | calc_ssm_energies_with_structure_profile.cc |
| file | calcFractionFolded.cc |
| file | cluster_alns.cc |
| Divide input alns into clusters based on gdtmm comparison of partial models. | |
| file | contact_map_from_homologs.cc |
| file | convertFragmentType.cc |
| file | dumpPhiPsiStats.cc |
| file | enumerate_junctions.py |
| file | evalFullLength.cc |
| file | evalRepeats.cc |
| file | extractNativeRepeats.cc |
| file | filterAlignments.cc |
| file | filterImperfectAln.cc |
| This takes two sets of alignments. 1 perfect and 1 imperfect. The output is the residues of the imperfect alignment that are correctly aligned. | |
| file | findNaturallyOccuringAlphaRepeats.cc |
| file | fragments_to_ss.cc |
| file | get_junctions_from_legos.py |
| file | hle_predict.cc |
| file | minimalCstHomology.cc |
| : Generates the minimal coordinate constraints necessary for fixing homology model. Also creates fasta with virtual. @usage: -in::file::alignment alignment.filt -in::file::template_pdb <pdb names from within the alignment> -in:file:coordCsts <pdb names from within the alignment> -in:file:fasta <fasta name> | |
| file | minimalCstRelax.cc |
| For the first structure in the alignment compare the deviation between native and the relaxed native structure. Then constraints are modified and coordinate constraints are added. If an alignment is given only the residues from the beginning to end of the alignment are used. | |
| file | outputAbego.cc |
| file | outputLayerDesignBurial.cc |
| file | outputRama.cc |
| file | outputSasa.cc |
| file | predictedCstFilter.cc |
| file | repeat_dock.cc |
| file | silents_to_ss.cc |
| file | tj_util.hh |
| file | unalignedEvaluate.cc |
| This takes an alignment file, fasta file, and a silent file. It then evaluates the qualities of the loops. | |
