evalFullLength.cc File Reference

#include <basic/Tracer.hh>
#include <numeric/conversions.hh>
#include <numeric/trig.functions.hh>
#include <numeric/xyz.functions.hh>
#include <numeric/xyzVector.hh>
#include <core/chemical/util.hh>
#include <core/chemical/ResidueTypeSet.fwd.hh>
#include <core/conformation/Residue.hh>
#include <core/id/NamedAtomID.hh>
#include <core/import_pose/import_pose.hh>
#include <core/import_pose/pose_stream/util.hh>
#include <core/import_pose/pose_stream/MetaPoseInputStream.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/ScoreType.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/packing/compute_holes_score.hh>
#include <core/scoring/packing/HolesParams.hh>
#include <core/scoring/packstat/compute_sasa.hh>
#include <core/types.hh>
#include <core/sequence/ABEGOManager.hh>
#include <core/util/SwitchResidueTypeSet.hh>
#include <devel/init.hh>
#include <utility/vector1.hh>
#include <protocols/jumping/util.hh>
#include <protocols/loops/Loop.hh>
#include <protocols/loops/Loops.hh>
#include <basic/database/open.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/holes.OptionKeys.gen.hh>
#include <basic/options/keys/remodel.OptionKeys.gen.hh>
#include <utility/io/ozstream.hh>
#include <iostream>
#include <ObjexxFCL/format.hh>

Functions
Size	ala_ct (const core::pose::Pose &pose)
Size	glu_ct (const core::pose::Pose &pose)
Size	tyr_ct (const core::pose::Pose &pose)
Real	get_holes_score (const core::pose::Pose &pose)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	tr ("evalFullLength")

Function Documentation

ala_ct()

Size ala_ct

(

const core::pose::Pose &

pose

)

References utility::io::oc::cout, create_a3b_hbs::ii, beta_nonlocal::pose, and create_a3b_hbs::score.

Referenced by main().

get_holes_score()

Real get_holes_score

(

const core::pose::Pose &

pose

)

References basic::database::full_name(), and beta_nonlocal::pose.

Referenced by main().

glu_ct()

Size glu_ct

(

const core::pose::Pose &

pose

)

References utility::io::oc::cout, create_a3b_hbs::ii, beta_nonlocal::pose, and create_a3b_hbs::score.

Referenced by main().

main()

int main	(	int	argc,
		char *	argv[]
	)

References ala_ct(), argv, basic::options::OptionKeys::chemical::chemical, utility::io::oc::cout, pyrosetta::create_score_function, test.T009_Exceptions::e, ObjexxFCL::format::F(), get_holes_score(), glu_ct(), ObjexxFCL::format::I(), basic::init(), gaussian-sampling::input, out::file::o(), option, bin_torsions::output, pyrosetta.distributed.io::pose_from_file, basic::options::OptionKeys::mp::assembly::poses, oop_conformations::scorefxn, basic::options::OptionKeys::frags::scoring::scoring, tag, tag_from_pose(), and tyr_ct().

tyr_ct()

Size tyr_ct

(

const core::pose::Pose &

pose

)

References utility::io::oc::cout, create_a3b_hbs::ii, beta_nonlocal::pose, and create_a3b_hbs::score.

Referenced by main().

Variable Documentation

tr

basic::Tracer tr("evalFullLength") ( "evalFullLength"  )

static