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aln_to_disulf.cc File Reference
#include <core/types.hh>
#include <devel/init.hh>
#include <basic/Tracer.hh>
#include <core/chemical/util.hh>
#include <core/id/SequenceMapping.hh>
#include <basic/options/option.hh>
#include <utility/io/ozstream.hh>
#include <core/sequence/util.hh>
#include <core/sequence/Sequence.hh>
#include <core/sequence/SequenceAlignment.hh>
#include <core/pose/Pose.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/pose/annotated_sequence.hh>
#include <utility/exit.hh>
#include <utility/vector1.hh>
#include <utility/string_util.hh>
#include <utility/file/file_sys_util.hh>
#include <map>
#include <iostream>
#include <string>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/cm.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <core/import_pose/import_pose.hh>
#include <core/conformation/Residue.hh>

Namespaces

 aln_to_disulf
 

Functions

utility::vector1< std::pair< Size, Size > > get_disulfides_from_aln (core::pose::Pose templatePose, core::sequence::SequenceAlignment aln)
 
std::map< std::string, core::pose::Poseposes_from_cmd_line (utility::vector1< std::string > const &fn_list)
 
int main (int argc, char *argv[])
 

Variables

basic::options::FileVectorOptionKey aln_to_disulf::coordCstFiles ("minimalCstHomology:coordCstFiles")
 
basic::options::BooleanOptionKey aln_to_disulf::only_res_out ("minimalCstHomology:only_res_out")
 

Detailed Description

Author
TJ Brunette

Function Documentation

◆ get_disulfides_from_aln()

utility::vector1< std::pair< Size, Size> > get_disulfides_from_aln ( core::pose::Pose  templatePose,
core::sequence::SequenceAlignment  aln 
)

◆ main()

int main ( int  argc,
char *  argv[] 
)

◆ poses_from_cmd_line()

std::map< std::string, core::pose::Pose > poses_from_cmd_line ( utility::vector1< std::string > const &  fn_list)