ScoreFragmentSetMover Class Reference

Public Member Functions
	ScoreFragmentSetMover ()
void	run ()
core::Real	overlap_score (CAtrace &pose1, CAtrace &pose2, core::Size offset, protocols::electron_density::DensitySymmInfo const &symminfo)
core::Real	clash_score (CAtrace &pose1, CAtrace &pose2, core::Size offset, protocols::electron_density::DensitySymmInfo const &symminfo)
core::Real	closability_score (CAtrace &pose1, CAtrace &pose2, core::Size offset, protocols::electron_density::DensitySymmInfo const &symminfo)
virtual std::string	get_name () const

Private Attributes
core::Real	steepness_
core::Real	clash_dist_
core::Real	overlap_width_
core::Real	unclosable_penalty_
utility::vector1< core::Real >	gap_lengths_
utility::vector1< core::Real >	gap_weights_

Constructor & Destructor Documentation

ScoreFragmentSetMover()

ScoreFragmentSetMover::ScoreFragmentSetMover

(

)

Member Function Documentation

clash_score()

core::Real ScoreFragmentSetMover::clash_score	(	CAtrace &	pose1,
		CAtrace &	pose2,
		core::Size	offset,
		protocols::electron_density::DensitySymmInfo const &	symminfo
	)

References create_a3b_hbs::i, enumerate_junctions::int, create_a3b_hbs::j, offset, test.T008_Serialization::pose1, and test.T008_Serialization::pose2.

closability_score()

core::Real ScoreFragmentSetMover::closability_score	(	CAtrace &	pose1,
		CAtrace &	pose2,
		core::Size	offset,
		protocols::electron_density::DensitySymmInfo const &	symminfo
	)

References dist(), offset, test.T008_Serialization::pose1, test.T008_Serialization::pose2, and runtime_assert.

get_name()

virtual std::string ScoreFragmentSetMover::get_name ( ) const

inlinevirtual

overlap_score()

core::Real ScoreFragmentSetMover::overlap_score	(	CAtrace &	pose1,
		CAtrace &	pose2,
		core::Size	offset,
		protocols::electron_density::DensitySymmInfo const &	symminfo
	)

References dist(), create_a3b_hbs::i, create_a3b_hbs::ii, enumerate_junctions::int, create_a3b_hbs::j, beta_nonlocal::jj, offset, test.T008_Serialization::pose1, test.T008_Serialization::pose2, and ncontact::seqsep.

run()

void ScoreFragmentSetMover::run

(

)

References ObjexxFCL::abs(), clash_score(), basic::Tracer::Debug, test.T009_Exceptions::e, ObjexxFCL::end(), predPRE::fields, kmeans_adaptive_kernel_density_bb_dependent_rotlib::idx, subloop_histogram::iterator, kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, create_a3b_hbs::nres, offset, basic::options::option, option, erraser_single_res_analysis::out, overlap_score(), loops_kic::rms, runtime_assert, extract_by_sidechain_sasa_score::scorefile, sfd, in::file::silent(), ObjexxFCL::size(), utility::string_split(), tag, TR, and basic::options::OptionKeys::inout::dbms::user.

Referenced by main().

Member Data Documentation

clash_dist_

core::Real ScoreFragmentSetMover::clash_dist_

private

gap_lengths_

utility::vector1< core::Real > ScoreFragmentSetMover::gap_lengths_

private

gap_weights_

utility::vector1< core::Real > ScoreFragmentSetMover::gap_weights_

private

overlap_width_

core::Real ScoreFragmentSetMover::overlap_width_

private

steepness_

core::Real ScoreFragmentSetMover::steepness_

private

unclosable_penalty_

core::Real ScoreFragmentSetMover::unclosable_penalty_

private

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The documentation for this class was generated from the following file:

• src/apps/public/electron_density/denovo_density.cc