test.T008_Serialization Namespace Reference

Variables
	pose1 = pyrosetta.pose_from_sequence("ARNDCEQGHILKMFPSTWYV")
	pose2 = pyrosetta.pose_from_sequence("DDDDDD")
	oss = rosetta.std.ostringstream()
	arc = rosetta.cereal.BinaryOutputArchive(oss);
	pose1_l = pyrosetta.Pose()
	pose2_l = pyrosetta.Pose()
	iss = rosetta.std.istringstream( oss.bytes() )

Variable Documentation

arc

test.T008_Serialization.arc = rosetta.cereal.BinaryOutputArchive(oss);

iss

test.T008_Serialization.iss = rosetta.std.istringstream( oss.bytes() )

Referenced by InterfaceStrandFinderMover.apply(), check_redundant(), cxdock_design(), dock(), energy_cluster(), getline(), Hit.Hit(), MatchSet.init(), main(), make_symm_data(), parse_position(), PoseWrap.PoseWrap(), DisulfEposDatabase.read_data_file(), read_ddg_file(), read_fragdata(), basic.read_metric_value_vector1(), retag(), SpacegroupHit.SpacegroupHit(), numeric::interpolation.spline_from_stream(), to_integer(), and tokenize_string().

oss

test.T008_Serialization.oss = rosetta.std.ostringstream()

Referenced by utility::tag::XMLSchemaDefinition.add_top_level_element(), CrystFFTDock.apply(), pointGroupHit.as_string(), fiberHit.as_string(), basic::datacache::DataMap.category_map(), utility::tag.concat_stringlist(), doit(), doit_refine(), double_helix_test(), CrystFFTDock.dump_transformed_pdb(), utility.exit_handler(), utility::tag::XMLSchemaDefinition.full_definition(), basic::resource_manager::ResourceManager.get_resource(), handle_assert_failure(), utility::tag.handle_structured_xml_error(), basic.handles_metric_value(), helix_ST(), basic::resource_manager::ResourceManager.initialize_from_commandline(), lariat_modeling(), basic::resource_manager::locator::FileSystemResourceLocator.locate_resource_stream(), numeric::expression_parser::ArithmeticScanner.log_error(), main(), MC_run(), one_chain_MC_sampling(), utility::tag.print_node_stack(), numeric::expression_parser::TokenSet.print_to_curr_pos(), processRegions(), basic::resource_manager::ResourceManager.read_resource_locators_tags(), basic::resource_manager::ResourceManager.read_resources_tags(), report(), FragmentAssemblyMover.run(), utility::tag::XMLValidatorImpl.set_schema(), pointGroupHit.show(), str(), SpacegroupHit.to_string(), InterfaceHit.to_string(), traceCAs(), use_backrub(), basic::resource_manager::ResourceManager.validate_input_against_xsd(), utility::tag.validate_xml_against_xsd(), and utility::tag::XMLSchemaComplexTypeGeneratorImpl.write_complex_type_to_schema().

pose1

test.T008_Serialization.pose1 = pyrosetta.pose_from_sequence("ARNDCEQGHILKMFPSTWYV")

Referenced by aa2sim_all(), aa2sim_ca(), aa2sim_sc(), align_with_offset(), append_jumpless_pose(), CrystCluster.apply(), myspace::Evaluator.apply(), base_doublet_rmsd_test(), ExposedStrandMover.bb_rmsd(), betas_match(), bk_test2(), cal_distance(), calc_nonlocal_segment_bb_rmsd(), ScoreFragmentSetMover.clash_score(), clash_score(), ScoreFragmentSetMover.closability_score(), ClosabilityScore.closability_score(), do_align(), do_tmscore(), figure_out_best_alpha_beta_gamma(), get_ddG(), get_distance_measure(), ClusterCycDisulf.get_distance_measure(), get_gap_size(), graft_in_positions(), graft_pdb(), is_desired_resnum(), is_interface_CA(), is_interface_heavyatom(), is_interface_sc(), ligand_rmsd(), main(), make_olig(), ClosabilityScore.miniPose_creator(), ExposedStrandMover.move_superimpose(), MPframeworkTest1Mover.move_together(), nosuper_CA_rmsd(), ScoreFragmentSetMover.overlap_score(), overlap_score(), randomly_shift_and_tilt_poses(), read_silent_input_as_library(), rmsd_compute(), abbinding.rmsd_frmk_chothia_num_ab(), rna_superimpose_and_graft_test(), sicdock_thread_num(), soft_overlap_score(), std_clash_check(), abbinding.superimpose_antigen(), superimpose_pdb(), superimpose_via_alignment(), swap_poses(), TCDock.TCDock(), use_in_rmsd(), use_in_rmsd_offset(), and verify_identical().

pose1_l

test.T008_Serialization.pose1_l = pyrosetta.Pose()

pose2

test.T008_Serialization.pose2 = pyrosetta.pose_from_sequence("DDDDDD")

Referenced by aa2sim_all(), aa2sim_ca(), aa2sim_sc(), align_with_offset(), append_jumpless_pose(), CrystCluster.apply(), myspace::Evaluator.apply(), base_doublet_rmsd_test(), ExposedStrandMover.bb_rmsd(), betas_match(), bk_test(), bk_test2(), cal_distance(), calc_nonlocal_segment_bb_rmsd(), calculate_hASA_by_type_and_attractiveE(), ScoreFragmentSetMover.clash_score(), clash_score(), ScoreFragmentSetMover.closability_score(), ClosabilityScore.closability_score(), compute_intrinsic_deviation(), do_align(), do_tmscore(), figure_out_best_alpha_beta_gamma(), get_ddG(), get_distance_measure(), ClusterCycDisulf.get_distance_measure(), get_gap_size(), graft_pdb(), is_interface_heavyatom_pair(), ligand_rmsd(), main(), make_olig(), ClosabilityScore.miniPose_creator(), ExposedStrandMover.move_superimpose(), MPframeworkTest1Mover.move_together(), nosuper_CA_rmsd(), output_superimposed_pdb(), ScoreFragmentSetMover.overlap_score(), overlap_score(), randomly_shift_and_tilt_poses(), read_silent_input_as_library(), rmsd_compute(), abbinding.rmsd_frmk_chothia_num_ab(), rna_superimpose_and_graft_test(), rna_torsion_check_test(), protocols::abinitio::Application.run(), run_m8(), RunPepSpec(), sicdock_thread_num(), soft_overlap_score(), std_clash_check(), abbinding.superimpose_antigen(), superimpose_pdb(), superimpose_via_alignment(), swap_poses(), TCDock.TCDock(), myspace.test_recombine(), use_in_rmsd(), use_in_rmsd_offset(), and verify_identical().

pose2_l

test.T008_Serialization.pose2_l = pyrosetta.Pose()