overlap_score.hh File Reference

#include <core/types.hh>
#include <core/pose/Pose.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/pose/util.hh>
#include <core/import_pose/import_pose.hh>
#include <core/chemical/ChemicalManager.hh>
#include <utility/vector1.hh>
#include <utility/exit.hh>
#include <apps/pilot/rayyrw/rms_util.hh>
#include <apps/pilot/rayyrw/util.hh>
#include <basic/Tracer.hh>

Macros
#define	apps_pilot_rayyrw_overlap_score_hh

Functions
bool	isOverlapping (core::pose::Pose const &pose_lower, core::Size const pos_lower, core::Size const pos_upper)
core::Real	soft_overlap_score (core::pose::Pose const &pose1, core::Size const pos1, core::pose::Pose const &pose2, core::Size const pos2, core::Real overlap_dist_cutoff=3.0, core::Real steepness_wt=8.0, int seq_sep=5, core::Real clash_dist=3.0, core::Real clash_return_score=10)
core::Real	overlap_score (core::pose::Pose const &pose1, core::Size const pos1, core::pose::Pose const &pose2, core::Size const pos2, core::Real overlap_wt=1.0, core::Real steepness_wt=1.0, int seq_sep=5, core::Real clash_dist=3.0, core::Real clash_return_score=500)

Variables
static basic::Tracer	tr_overlap_score ("overlap_score")

Macro Definition Documentation

apps_pilot_rayyrw_overlap_score_hh

#define apps_pilot_rayyrw_overlap_score_hh

Function Documentation

isOverlapping()

bool isOverlapping	(	core::pose::Pose const &	pose_lower,
		core::Size const	pos_lower,
		core::Size const	pos_upper
	)

Referenced by FragMonteCarlo::load_scorefiles(), overlap_score(), and soft_overlap_score().

overlap_score()

core::Real overlap_score	(	core::pose::Pose const &	pose1,
		core::Size const	pos1,
		core::pose::Pose const &	pose2,
		core::Size const	pos2,
		core::Real	overlap_wt = 1.0,
		core::Real	steepness_wt = 1.0,
		int	seq_sep = 5,
		core::Real	clash_dist = 3.0,
		core::Real	clash_return_score = 500
	)

References ObjexxFCL::abs(), dist(), isOverlapping(), oop_conformations::length, max(), min(), offset, test.T008_Serialization::pose1, and test.T008_Serialization::pose2.

Referenced by FragMonteCarlo::load_scorefiles(), ScoreFragmentSetMover::run(), SolutionRescoreMover::run(), and soft_overlap_score().

soft_overlap_score()

core::Real soft_overlap_score	(	core::pose::Pose const &	pose1,
		core::Size const	pos1,
		core::pose::Pose const &	pose2,
		core::Size const	pos2,
		core::Real	overlap_dist_cutoff = 3.0,
		core::Real	steepness_wt = 8.0,
		int	seq_sep = 5,
		core::Real	clash_dist = 3.0,
		core::Real	clash_return_score = 10
	)

References ObjexxFCL::abs(), dist(), isOverlapping(), oop_conformations::length, max(), min(), offset, overlap_score(), test.T008_Serialization::pose1, and test.T008_Serialization::pose2.

Referenced by main().

Variable Documentation

tr_overlap_score

basic::Tracer tr_overlap_score("overlap_score") ( "overlap_score"  )

static