util.hh File Reference

#include <core/types.hh>
#include <core/pose/Pose.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/pose/util.hh>
#include <core/import_pose/import_pose.hh>
#include <core/chemical/ChemicalManager.hh>
#include <utility/vector1.hh>
#include <utility/file/FileName.hh>
#include <utility/file/file_sys_util.hh>
#include <utility/exit.hh>
#include <basic/Tracer.hh>
#include <apps/pilot/rayyrw/rms_util.hh>
#include <sstream>

Macros
#define	apps_pilot_rayyrw_util_hh

Functions
core::Size	get_pos_from_fragfn (utility::file::FileName const &fragfn)
void	read_pdbs (utility::vector1< utility::file::FileName > const &frag_files, utility::vector1< core::pose::Pose > &frag_poses, utility::vector1< core::Size > &frag_positions)
void	get_frag_rmsd (utility::vector1< core::Real > &frag_rmsds, utility::vector1< core::Real > const &frag_positions, utility::vector1< core::pose::Pose > const &frag_poses, core::pose::Pose const &native_pose)
std::string	int2str (int n)
int	get_gap_size (core::pose::Pose const &pose1, core::Size const pos1, core::pose::Pose const &pose2, core::Size const pos2)
void	swap_poses (core::pose::Pose &pose1, core::Size pos1, core::pose::Pose &pose2, core::Size pos2)

Variables
static basic::Tracer	tr_util ("rayyrw_util")

Macro Definition Documentation

apps_pilot_rayyrw_util_hh

#define apps_pilot_rayyrw_util_hh

Function Documentation

get_frag_rmsd()

void get_frag_rmsd	(	utility::vector1< core::Real > &	frag_rmsds,
		utility::vector1< core::Real > const &	frag_positions,
		utility::vector1< core::pose::Pose > const &	frag_poses,
		core::pose::Pose const &	native_pose
	)

References demo.D060_Folding::counter, utility::io::oc::cout, create_a3b_hbs::i, native_frag_CA_RMSD(), and docking::native_pose.

Referenced by main().

get_gap_size()

int get_gap_size	(	core::pose::Pose const &	pose1,
		core::Size const	pos1,
		core::pose::Pose const &	pose2,
		core::Size const	pos2
	)

References max(), min(), test.T008_Serialization::pose1, and test.T008_Serialization::pose2.

get_pos_from_fragfn()

core::Size get_pos_from_fragfn

(

utility::file::FileName const &

fragfn

)

References utility::file::FileName::base(), utility::file::file_exists(), utility::file::FileName::name(), make_symmdef_file_denovo::pos, utility::string2int(), utility::string_split(), and utility_exit_with_message.

Referenced by read_pdbs().

int2str()

std::string int2str

(

int

n

)

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, and str().

Referenced by FragMonteCarlo::fragid_to_fragfn(), main(), FragMonteCarlo::report_results(), and FragMonteCarlo::updated_covered_rsds().

read_pdbs()

void read_pdbs	(	utility::vector1< utility::file::FileName > const &	frag_files,
		utility::vector1< core::pose::Pose > &	frag_poses,
		utility::vector1< core::Size > &	frag_positions
	)

References demo.D060_Folding::counter, utility::io::oc::cout, basic::options::OptionKeys::dna::specificity::frag_files, get_pos_from_fragfn(), create_a3b_hbs::i, make_symmdef_file_denovo::pos, and pyrosetta.distributed.io::pose_from_file().

Referenced by main().

swap_poses()

void swap_poses	(	core::pose::Pose &	pose1,
		core::Size	pos1,
		core::pose::Pose &	pose2,
		core::Size	pos2
	)

References test.T008_Serialization::pose1, test.T008_Serialization::pose2, and runtime_assert.

Variable Documentation

tr_util

basic::Tracer tr_util("rayyrw_util") ( "rayyrw_util"  )

static