clash_score.hh File Reference

#include <core/types.hh>
#include <core/pose/Pose.hh>
#include <core/pose/Pose.fwd.hh>
#include <utility/vector1.hh>
#include <basic/Tracer.hh>
#include <apps/pilot/rayyrw/util.hh>
#include <apps/pilot/rayyrw/rms_util.hh>

Functions
core::Size	std_clash_check (core::pose::Pose const &pose1, core::pose::Pose const &pose2, core::Real const clash_dist_threshold, core::Size const n_clashes_allowed=10)
core::Size	soften_clash_check (core::pose::Pose const &pose_lower, core::pose::Pose const &pose_upper, core::Real const clash_dist_threshold, core::Size const n_clashes_allowed=10)
core::Size	clash_score (core::pose::Pose const &pose1, core::Size const pos1, core::pose::Pose const &pose2, core::Size const pos2, core::Real const clash_dist_threshold)
core::Real	cal_score (core::Real dist)
core::Real	clash_score (core::pose::Pose const &pose1, core::pose::Pose const &pose2, core::Real const clash_dist_threshold=2, core::Size const n_clashes_allowed=10)

Variables
static basic::Tracer	tr_clash_score ("clash_score")

Function Documentation

cal_score()

core::Real cal_score

(

core::Real

dist

)

References utility::io::oc::cout, dist(), min(), and ObjexxFCL::pow().

clash_score() [1/2]

core::Real clash_score	(	core::pose::Pose const &	pose1,
		core::pose::Pose const &	pose2,
		core::Real const	clash_dist_threshold = 2,
		core::Size const	n_clashes_allowed = 10
	)

References test.T008_Serialization::pose1, test.T008_Serialization::pose2, and std_clash_check().

clash_score() [2/2]

core::Size clash_score	(	core::pose::Pose const &	pose1,
		core::Size const	pos1,
		core::pose::Pose const &	pose2,
		core::Size const	pos2,
		core::Real const	clash_dist_threshold
	)

References max(), min(), test.T008_Serialization::pose1, test.T008_Serialization::pose2, soften_clash_check(), and std_clash_check().

Referenced by create_node_comparison_table(), dump_clash_pdb(), gen_pep_bb_sequential(), FragMonteCarlo::load_scorefiles(), main(), ScoreFragmentSetMover::run(), and SolutionRescoreMover::run().

soften_clash_check()

core::Size soften_clash_check	(	core::pose::Pose const &	pose_lower,
		core::pose::Pose const &	pose_upper,
		core::Real const	clash_dist_threshold,
		core::Size const	n_clashes_allowed = 10
	)

References cal_distance(), and dist().

Referenced by clash_score().

std_clash_check()

core::Size std_clash_check	(	core::pose::Pose const &	pose1,
		core::pose::Pose const &	pose2,
		core::Real const	clash_dist_threshold,
		core::Size const	n_clashes_allowed = 10
	)

References dist(), oop_conformations::length, test.T008_Serialization::pose1, and test.T008_Serialization::pose2.

Referenced by clash_score().

Variable Documentation

tr_clash_score

basic::Tracer tr_clash_score("clash_score") ( "clash_score"  )

static