InterfaceStrandFinderMover Class Reference

Inheritance diagram for InterfaceStrandFinderMover:

Public Member Functions
	InterfaceStrandFinderMover ()
virtual core::Real	bb_score (pose::Pose &pose, core::Size aligned_chain_num, core::scoring::ScoreFunctionOP &scorefxn)
virtual std::pair< pose::Pose, Size >	dock_strands (Pose known_complex, Size known_start, Pose pose, Size found_start)
virtual Size	find_known_strand_start (Pose known_complex, Pose knownStrand)
virtual bool	is_strand_exposed (core::pose::Pose pose, Size startRes, Size endRes)
virtual void	apply (core::pose::Pose &pose)
virtual MoverOP	clone () const
virtual std::string	get_name () const
virtual MoverOP	fresh_instance () const

Private Attributes
scoring::ScoreFunctionOP	scorefxn_
core::Real	max_RMSD_
core::Size	beta_length_
core::Real	vector_length_
core::Real	exposure_radius_
core::Real	maxE_

Constructor & Destructor Documentation

InterfaceStrandFinderMover()

InterfaceStrandFinderMover::InterfaceStrandFinderMover

(

)

References InterfaceStrandFinder::is_beta_length, InterfaceStrandFinder::is_exposure_radius, InterfaceStrandFinder::is_max_RMSD, InterfaceStrandFinder::is_maxE, InterfaceStrandFinder::is_vector_length, and option.

Member Function Documentation

apply()

void InterfaceStrandFinderMover::apply ( core::pose::Pose &  pose )

virtual

References utility::file::FileName::base(), utility::io::izstream::close(), erraser_util::copy(), utility::io::oc::cout, data, basic::options::OptionKeys::in::file::dssp, lactamize::filename, create_a3b_hbs::first, utility::io::izstream::getline(), utility::io::izstream::good(), create_a3b_hbs::i, InterfaceStrandFinder::is_complexes, InterfaceStrandFinder::is_known_strands, test.T008_Serialization::iss, create_a3b_hbs::j, create_a3b_hbs::k, extract_by_sidechain_sasa_score::l, line, option, erraser_single_res_analysis::out, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, pyrosetta.io::poses_from_files(), loops_kic::rms, basic::options::OptionKeys::inout::dbms::user, utility_exit_with_message, utility_exit_with_message_status, and value.

Referenced by pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask::execute().

bb_score()

core::Real InterfaceStrandFinderMover::bb_score ( pose::Pose &  pose, core::Size  aligned_chain_num, core::scoring::ScoreFunctionOP &  scorefxn  )

virtual

References numeric::distance_squared(), create_a3b_hbs::ii, create_a3b_hbs::j, beta_nonlocal::jj, beta_nonlocal::pose, res, oop_conformations::scorefxn, TR, and basic::options::OptionKeys::in::file::xyz.

clone()

virtual MoverOP InterfaceStrandFinderMover::clone ( ) const

inlinevirtual

dock_strands()

std::pair< Pose, Size > InterfaceStrandFinderMover::dock_strands ( Pose  known_complex, Size  known_start, Pose  pose, Size  found_start  )

virtual

References utility::io::oc::cout, create_a3b_hbs::i, create_a3b_hbs::j, beta_nonlocal::pose, and superimpose_pose().

find_known_strand_start()

Size InterfaceStrandFinderMover::find_known_strand_start ( Pose  known_complex, Pose  knownStrand  )

virtual

References create_a3b_hbs::i, and utility_exit_with_message.

fresh_instance()

virtual MoverOP InterfaceStrandFinderMover::fresh_instance ( ) const

inlinevirtual

get_name()

virtual std::string InterfaceStrandFinderMover::get_name ( ) const

inlinevirtual

is_strand_exposed()

bool InterfaceStrandFinderMover::is_strand_exposed ( core::pose::Pose  pose, Size  startRes, Size  endRes  )

virtual

References create_a3b_hbs::i, create_a3b_hbs::j, numeric::xyzVector< T >::normalize(), and beta_nonlocal::pose.

Member Data Documentation

beta_length_

core::Size InterfaceStrandFinderMover::beta_length_

private

exposure_radius_

core::Real InterfaceStrandFinderMover::exposure_radius_

private

max_RMSD_

core::Real InterfaceStrandFinderMover::max_RMSD_

private

maxE_

core::Real InterfaceStrandFinderMover::maxE_

private

scorefxn_

scoring::ScoreFunctionOP InterfaceStrandFinderMover::scorefxn_

private

vector_length_

core::Real InterfaceStrandFinderMover::vector_length_

private

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The documentation for this class was generated from the following file:

• src/apps/pilot/tjacobs/InterfaceStrandFinderMover.cc