Rosetta
Classes | Functions | Variables
denovo_density.cc File Reference
#include <devel/init.hh>
#include <core/pose/Pose.hh>
#include <core/pose/init_id_map.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/pose/variant_util.hh>
#include <core/pose/subpose_manipulation_util.hh>
#include <core/import_pose/import_pose.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/util.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/AtomType.hh>
#include <core/util/SwitchResidueTypeSet.hh>
#include <core/sequence/util.hh>
#include <core/sequence/Sequence.hh>
#include <core/conformation/ResidueFactory.hh>
#include <protocols/electron_density/DensitySymmInfo.hh>
#include <protocols/electron_density/DockFragmentsIntoDensityMover.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/optimization/CartesianMinimizer.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/scoring/electron_density/ElectronDensity.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/fragment/util.hh>
#include <core/fragment/FragmentIO.hh>
#include <core/fragment/FragSet.hh>
#include <core/fragment/Frame.hh>
#include <core/fragment/FrameIterator.hh>
#include <core/fragment/FragData.hh>
#include <core/fragment/ConstantLengthFragSet.hh>
#include <core/fragment/BBTorsionSRFD.hh>
#include <core/io/silent/BinarySilentStruct.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/SilentFileOptions.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/edensity.OptionKeys.gen.hh>
#include <ObjexxFCL/format.hh>
#include <numeric/xyzVector.hh>
#include <numeric/xyzVector.io.hh>
#include <numeric/random/random.hh>
#include <utility/string_util.hh>
#include <tuple>
#include <basic/Tracer.hh>
#include <string>
#include <algorithm>
#include <utility/file/FileName.hh>
#include <fstream>
#include <core/chemical/AtomTypeSet.hh>

Classes

struct  CAtrace
 
struct  FragID
 
class  DockFragmentsMover
 
class  ScoreFragmentSetMover
 
class  FragmentAssemblyMover
 
class  ConsensusFragmentMover
 
class  SolutionRescoreMover
 

Functions

void ReadCAsFromPDB (std::string pdbfile, utility::vector1< numeric::xyzVector< core::Real > > &cas)
 
bool operator< (const FragID &x, const FragID &y)
 
int main (int argc, char *argv[])
 

Variables

static basic::Tracer TR ("denovo_density")
 

Function Documentation

◆ main()

int main ( int  argc,
char *  argv[] 
)

◆ operator<()

bool operator< ( const FragID x,
const FragID y 
)

References x, and predPRE::y.

◆ ReadCAsFromPDB()

void ReadCAsFromPDB ( std::string  pdbfile,
utility::vector1< numeric::xyzVector< core::Real > > &  cas 
)

Variable Documentation

◆ TR

basic::Tracer TR("denovo_density") ( "denovo_density"  )
static