test_cluster.cc File Reference

#include <protocols/toolbox/KCluster.hh>
#include <devel/init.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/cluster.OptionKeys.gen.hh>
#include <basic/Tracer.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/SilentStruct.hh>
#include <utility/exit.hh>
#include <iostream>

Functions
void	show_cluster_assignment (KClusterElementOP elem, KClusterData dat)
void	save_cluster_tree_lite (KClusterElementOP elem, KClusterData dat)
void	set_up_engine (KClusterOP &engine, Size ndx)
bool	do_clustering (KClusterData &data, KClusterElementOP element, Size level, Size last, Size firstcenter=0)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("test_cluster")

Function Documentation

do_clustering()

bool do_clustering	(	KClusterData &	data,
		KClusterElementOP	element,
		Size	level,
		Size	last,
		Size	firstcenter = 0
	)

References data, create_a3b_hbs::first, create_a3b_hbs::i, cluster::K_redundant(), basic::options::OptionKeys::out::level, make_symmdef_file_denovo::nsub, option, and set_up_engine().

Referenced by main().

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, utility::io::oc::cout, hist2d::dat, do_clustering(), test.T009_Exceptions::e, build_restypes::elem, basic::init(), cluster::K_level(), cluster::lite(), option, save_cluster_tree_lite(), show_cluster_assignment(), out::file::silent(), and basic::options::OptionKeys::inout::dbms::user.

save_cluster_tree_lite()

void save_cluster_tree_lite	(	KClusterElementOP	elem,
		KClusterData	dat
	)

References hist2d::dat, build_restypes::elem, detail::find(), create_a3b_hbs::ii, beta_nonlocal::jj, kk, basic::options::OptionKeys::cm::nn, option, sfd, in::file::silent(), out::file::silent(), in::file::silent_list(), challenge::ss, extract_by_sidechain_sasa_score::tags, TR, basic::options::OptionKeys::inout::dbms::user, and test.T110_numeric::zz.

Referenced by main().

set_up_engine()

void set_up_engine	(	KClusterOP &	engine,
		Size	ndx
	)

References cluster::K_n_cluster(), cluster::K_radius(), cluster::K_style(), ndx, option, subloop_histogram::size, basic::options::OptionKeys::inout::dbms::user, and utility_exit_with_message.

Referenced by do_clustering().

show_cluster_assignment()

void show_cluster_assignment	(	KClusterElementOP	elem,
		KClusterData	dat
	)

References hist2d::dat, build_restypes::elem, create_a3b_hbs::ii, and TR.

Referenced by main().

Variable Documentation

TR

basic::Tracer TR("test_cluster") ( "test_cluster"  )

static

Referenced by save_cluster_tree_lite(), and show_cluster_assignment().