build_restypes Namespace Reference

Variables
	restype = sys.argv[1]
string	inpfile = "../centroid/residue_types/" + restype + ".params"
string	outfile = "residue_types/" + restype + ".params"
dictionary	ideal_dat_map
dictionary	nbr_radius_map
	inp = open(inpfile,'r')
	lines = inp.readlines()
	elem = line.split()

Variable Documentation

elem

build_restypes.elem = line.split()

Referenced by VecContains.convert(), get_mutations_from_file(), graft_pdb(), homolog_finder(), main(), MainWindow.paintGL(), ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget.paintGL(), utility::tag::XMLSchemaComplexTypeGeneratorImpl.prepare_sequence_of_subelement_sets(), utility::tag::XMLSchemaComplexTypeGeneratorImpl.prepare_subelement_choice_opt(), utility::tag::XMLSchemaComplexTypeGeneratorImpl.prepare_subelement_choice_req(), utility::tag::XMLSchemaComplexTypeGeneratorImpl.prepare_subelement_repeatable(), utility::tag::XMLSchemaComplexTypeGeneratorImpl.prepare_subelement_single_instance_optional(), utility::tag::XMLSchemaComplexTypeGeneratorImpl.prepare_subelement_single_instance_required(), utility::tag::XMLSchemaComplexTypeGeneratorImpl.prepare_subelement_single_instance_required_ordered(), numeric::kinematic_closure.printMatrix(), numeric::kinematic_closure.printVector(), resample_full_model(), save_cluster_tree_lite(), and show_cluster_assignment().

ideal_dat_map

dictionary build_restypes.ideal_dat_map

inp

build_restypes.inp = open(inpfile,'r')

Referenced by get_N(), make_two_trimers(), and basic::MetricValue< T >.set().

inpfile

string build_restypes.inpfile = "../centroid/residue_types/" + restype + ".params"

lines

build_restypes.lines = inp.readlines()

nbr_radius_map

dictionary build_restypes.nbr_radius_map

outfile

string build_restypes.outfile = "residue_types/" + restype + ".params"

restype

build_restypes.restype = sys.argv[1]

Referenced by HotspotPlacementMover.apply(), calculate_total_hASA_within_distance_avg_values(), calculate_total_hASA_within_distance_avgresiduevalues_allnbs_conditionalonnumnbs(), collect_residue_types(), correct_dunbrack(), SetupHotspotMover.generate_csts(), CrystDesign.greedy_revert_unsats(), load_as_fullatom(), main(), max_atom_hbonds(), output_residue_types(), print_tree(), reroot_restype(), and rna_design_test().