rotamerize_disulfides.cc File Reference

Reads in a pdb to rosetta. More...

#include <devel/init.hh>
#include <utility/vector1.hh>
#include <basic/options/util.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/hotspot.OptionKeys.gen.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>
#include <basic/options/keys/blivens.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/pose/Pose.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <utility/exit.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/pack_rotamers.hh>
#include <protocols/protein_interface_design/movers/TryRotamers.hh>
#include <protocols/simple_filters/EnergyPerResidueFilter.hh>
#include <core/chemical/ResidueType.hh>
#include <core/pack/rotamers/SingleLigandRotamerLibrary.hh>
#include <core/pack/dunbrack/RotamerLibrary.hh>
#include <core/scoring/ScoreType.hh>
#include <algorithm>
#include <core/import_pose/import_pose.hh>
#include <basic/Tracer.hh>

Functions
int	usage (string msg)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("pilot_apps.blivens.rotamerize_disulfides")

Detailed Description

Reads in a pdb to rosetta.

Author

Spencer Bliven blive.nosp@m.ns@u.nosp@m..wash.nosp@m.ingt.nosp@m.on.ed.nosp@m.u @created October 2008 @usage rotamerize_disulfides -database db -extra_res_fa DSF.params -s input.pdb -prefix output_prefix -target_res 1 [-nstructs 9999]

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, count, test.T009_Exceptions::e, basic::init(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, local::nstruct, option, lactamize::outfile, kic_runner::pdb, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, out::prefix(), build_restypes::restype, basic::options::OptionKeys::ufv::right, rot, in::file::s(), basic::options::OptionKeys::blivens::score_type, blivens::score_type(), test.T120_core::sfxn, basic::options::start_file(), basic::options::OptionKeys::hotspot::target, hotspot::target_res(), vancomycin::task, hotspot::threshold(), TR, usage(), and basic::options::OptionKeys::inout::dbms::user.

usage()

int usage

(

string

msg

)

References basic::Tracer::Error, utility::options::OptionKeys::options::exit, TR, and utility_exit.

Referenced by main().

Variable Documentation

TR

basic::Tracer TR("pilot_apps.blivens.rotamerize_disulfides") ( "pilot_apps.blivens.rotamerize_disulfides"  )

static

Referenced by main(), and usage().